XLOC_042893 (gene) - C. hemisphaerica

Overview
NameXLOC_042893
Unique NameXLOC_042893
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_49:398842..406178+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042893 ID=XLOC_042893|Name=XLOC_042893|organism=Clytia hemisphaerica|type=gene|length=7337bp|location=Sequence derived from alignment at scaffold_49:398842..406178+ (Clytia hemisphaerica)
ATCAAAATCAATATGTAtactttgaaattattttatacTCTCTTTTATAT CCTTTACACTATCTTATAAGTTTAcgtaagaaaattttgaaaagtagtGG GTTGAGCTTCACAACCGTTATAACATATAAGCTAGAAAATGACAGAAATC AAGAACAAAATTTTCACAGGCCAAGCAACCAATGGAGTAAAAGATTACTC AGAACTCAGTAAGATTGTACAAGAAACGTTTTTCGATTATTTGGTCAAAG AcgtcaaaatcgaaaatggaTGGAAGGTTTTAGATATCGGATGTGGCACT NATTATTTGGTCAAAGACGTCAAGATTGAAAAAGGATGGAAGGTTTTAGA TATCGGATGTGGCACTGGAAACAATAGTTTCAAATTATCACAAATGGTCG GAGAGCAAGGCAAAATTGTTGCTATTGATCCTATCAAAGATCGAATAACT GAAGCCAATTCTAGTTATAGCTCTCCAAATCTACATTTCTATGAGGGTTC AGCAAAGGATGTTACCAAATTTGGAAGTgattttgatttggttgttgCAG CTACAGTCATACACTGGATACCACCGCAAGAAAGACAAGAAGTGTTCCAA GGGATTATGCAAACTATGAAAGAAGGCGCTCAATTTATATTCAACATGAC AAAGAAGGATACTTTCAACATGATACCTATCTtggccaaaatcaaaacaa atcctTACAAGGGCGGAAACTACTGGCCTGTACCAGAGATCAAAGATATA GAGCAATTAGCCAGCAATTCTGGTTATAGAGATGTCCAGGTTAAGGAACA AGAAATGGTGCAACGATTACCCTCTCTCGATCAATATCTGAGATGGGCTG CTTCTTCTTTTCACACACGAGATTATGACCAAACATTGAAGGAGTTGAGA GATGTTTGTCAGAATGAAGATGTATCATGCCTTTATGATAAAGATGGACA TTTagtttataaacaaaaatatttctttgccTATTGTAGAAAATGAATTT AATTCAGTCCTCGATACCTGGCATAttcaattcaaataaaaaatttatat ttatcgaaagatttcaaaaaatgctcaTCTTTTCGCTCTAAGATGAAGAA GGTTTTATGAGATATCTGCAACAATTTGAGAGTGATATGGAATGACTTGT GTTTTGAAGCAATCCATCATCTTTCTATAGCAATACATCATAAATTTTCT GTCTTACTTCTGGAATCCCCATTTCGGATagatctttaaaaaataataaa atcagtcatataattaaCCAGGAATGATATGCCTGATATGGCATTTCGTG CAATTAGGATTAATACCCCTCGTATCATTTTGAAACAGTTTGAAATATCA ATCCCTAATTTCCCTCAATGTCATATCATTACCATTACTAATATATTAGC TATCAAAAACGAGTTCCTTATCTTCTCTAAACAGTATGACTCTAGTCTAT ACACTTCATTTCGAAAGTACAATTTCCGCCCACCCCAGCAACCTGACCCA TGCGGTTTTGCAGCAGGAAACTCAAGAcgcatcaaaaatattttatgtat tGTTTGCAAAGAGGATAATTCGTATTAAATTTAAACATCCACCCAGATAG GCAATTAACAAGGCAAGGCATTAACAAAAGGCACGAACGTTTATTATAAT TATAACAATGATACCTTagtaacaaaaatttcaaaagcaaGTTTTGCATA GCATGATGGTTTTGCATACTTTGTGTTCCCTGATTCAGTGACTTGATAAC AGCTGGTCATAATTTACTTACTGAGCAAGGTAACCCCACAGATATcactg taaagcccgaagggctagataggcaactttaagctttctccagcaaaaaa aagtgaagcaaaaatttgaccttttaaatttcgtgccgatggataggatc tagcattttaaatTGTTTTCGGAGTGCgatatcaaaaaaagtaggcggca aacgctatttcacatctctcaaaccggtgaaattgcatattttagtcacg tgactttggtaggaaatccttccaaacctaggcttcacttttcgataaaa gccgcaaatctagcccttcgggctttacagatctgtgggtaACCCTCTGA AGgcccttgaaaattaaccatctcAGGGAATAGTCTTTCCacagaaaatt ctacaacaacaatcttgttgtgcgccggaaatcaaaaaactagattttcc taatacggcgccctatttTAACTTTGTCTCGCTACTTTGTTGTTGTGGGC TGGGATTCTTGGCGATGCACGAACCTCAAGAAAACGAGATTGCTTATTcg tcagatttttttgttttcacaacTATAGAGCTTTAGTGTGCTGGGCAGAA AATATCACAgtctgatctcaggttatgaTTTAGTAGCTTAAAGTGTAGCG CTTTATTTTGACCAAAtctgccaaaataagttcccaccaaatttaatttt gtgCCAGAAGGTATCAGTCAGGACTAAGtcactttttgatattttatttc gtATATGATTTGAAAATCTCAAGCTATTTCCTTTTCAAAGGTGAATTCGG CACAAGATGCTTATTTATTCAAGAACTGTATGTTCTATGAGGatgcattt ttgtattttgagtaTTATCTCCTATCAAGATGTGACCAAATAGTGCAGAA AACTGTAAAGATTTTGATTAACTTTTTCCTCTAAGAAGCTttgaacacca aattttgctttgaaaacAGAAACTTTAAGAATTTGCGTCCCCGATGAGTG TCCCCAGggcaaaaatgcaaaaaaagtcgATGTCGTCCGATTCTAATGAA ATACAACACAATTAAATGGTGTAGAATCGAATGGCAATATTGTTTTTGGT GTATTTGGGTCTTGTAGGGGGTAAAATTGGGGGTTTTGGGcaaaaaatga cccaaaaattaagtttctccaattttgatgaaactttccacttttattca atttttcatgcaGAATACGAAAACAACATTCAAGTTTTATGAAAGCCCCC GAAATACACCTAGTATAAGAGGGGCTTTGGTCCAATTTTCGTCTTTTCAG GGTTTAAACAAGACCAAAAATTCGAGCTTCTTTGATTTTAATGAAACGTG AATTTGCAAGCATTTTTattgaataatttaaaattacACTCAAAATTAAC CCCAAACTTGCACCCGTAAAACGAAAGGGTTTTTTGTCCAAATATTAGGC TGTCCAGTGATACAAAATAATAATCAGAGGGTCCAATTTTTCTAATTCAA CCTGCTTTTAGTCCCAAGGTTAAGGGGTTTAGAATAAAATacgaatggtt cttttaaaaaatttttcgagaaaattacttttaaagagagaaaccttTTT GTGTCGCCACGCAATCCAGTTTACCAGAGCTTGAAATCTtcccatccacc aaattaaatctctgcgaaattttagaaaattgatcATTCTCCAAATTTAA TTTCCGCTAAAAATCTCATTTTgaccaatcgccaaattaaatcaacgcca aaattaatccacttaaggtagtagcctcatattataaaaaatagctgaaa tatttttcctcaaaatcacaaaaacttGGGGTGTAaaagtttttgtgatt ttgaggaaaaatatttcagctaTTTTACCTTACTCTTACCTTACCTTTTA CCTTACTTATGGACAATTTTAGTTGTGCTCGTTTATAGTTTACAGCCTGA ATATTAAGGCTAAAGAGATTGTATTAGATAATTTTCCGAATgacaaattt gagaaaaaatatcaaGTGAATTTTCTAGCAAATTAGAGTGATCGGACTGA GTTCTTTAATATTGATTGGGTGTATTACACGGCAAGGATTTGAAAGCAGA CTTTATCGAGAAACCTGAGCTTATCGAAATTCCGGGCTTTAAAAAAAGAG CTCACTTTGTAGAAGTGGTAACCATCCAGCTACACACACTTGACCATTAC CTCTAGTGGGTTGCTTTTTCAATCCATACactaaattttgaagaaaaacg aCAAAATTCGACAAACCTGCCAGGATAAAGACATTGGTGTCTTTACGACT CTACGTACGCGTACGGATGTCGCCAAGACTGTAATATCGACTCTTGATTC ACCGTCAAAActgcaaaaacttttattttgtcACCGCAAGACCCTCTTCT TCTAACACCGAAACACTGACATAAAAAGGGATAAACAGTAATACCGTCAA ACCCCCTTGcagaaaacaaactttttcgaATAATTNTTTCAACCTGCTTT TAGTCCCAAGGTTAAGGGGTTTAGAATAAAATacgaatggttcttttaaa aaaattttcgagaaaattacttttaaagagagaaaccttTTTGTGTCGCC ACGCAATCCAGTTTACCAGAGCTTGAAATCTtcccatccaccaaattaaa caTCTgcgaaattttagaaaattgatcATTCTCCAAATTTAATTTCCGCT AAAAATCTCATTTTgaccaatcgccaaattaaatcaacgccaaaattaat ccacttaaggtagcaGCCTCATATTATAAAAAAtagctgaaatatttttc ttcaaaatcacaaaaactttTACACCCCTTTTACCTTACTTATGGACAAT TTTAGTTGTGCTCGTTTATAGTTTACAGCCTGAATATTAAGGCTAAAGAA ATTGTATTAGATAATTTTCCGAATgacaaatttgagaaaaaatatcaaGT GAATTTTCTAGCAAATTAGAGTGATCGGACTGAGTTCTTTAATATTGATT GGGTGTATTACACGGCAAGGATTTGAAAGCAGACTTTATCGAGAAACCTG AGCTTATCGAAATTCCGGGCTTTAAAAAAAGAGCTCACTTTGTAGAAGTG GTAACCATCCAGCTACACACACTTGACCATTACCTCTAGTGGGTTGCTTT TTCAATCCATACactaaattttgaagaaaaacgaCAAAATTCGACAAACC TGCCAGGATAAAGACATTGGTGTCTTTACGACTCTACGTACGCGTACGGA TGTCGCCAAGACTGTAATATTGACTCTTGATTCACCGTCAAAActgcaaa aacttttattttgtcACCGCAAGACACTCTTCTTCTAACACCGAAACACT GACATAAAAAGGGATAAACAGTAATACCGTCAAACCCCCTTGcagaaaac aaactttttcgaATAATTTTAACAAGGAccaaatttaagatttttagtAC AATATTGCGATCTCATTGCAATTTGACTACAACCGATCTTGCTAATTGGT AGTGTGAAATGCTTTTATCAGACTTGCACCAAACCAAAGTGTGTTAGGGC ATGGTGGTGATGGACTCTCTACTTTCACTGGATGTCTTCTTCCTTTTAAT CGATCTTCNCAGCCTCATATTATAAAAAAtagctgaaatatttttcttca aaatcacaaaaactttTACACCCCCTTTACCTTACTTATGGACAATTTTA GTTGTGCTCGTATATAGTTTACAGCCTGAATATTAAGGCTAAAGAAATTG TATTAGATAATTTTCCGAATgacaaatttgagaaaaaatatcaaGTGAAT TTTCTAGCAAATTAGAGTGATCGGACTGAGTTCTTTAATATTGATTGGGT GTATTACACGGCAAGGATTTGAAAGCAGACTTTATCGAGAAACCTGAGCT TATCGAAATTCCGGGCTTTAAAAAAAGAGCTCACTTTGTAGAAGTGGTAA CCATCCAGCTACACACACTTGACCATTACCTCTAGTGGGTTGCTTTTTCA ATCCATACactaaattttgaagaaaaacgaCAAAATTCGACAAACCTGCC AGGATAAAGACATTGGTGTCTTTACGACTCTACGTACGCGTACGGATGTC GCCAAGACTGTAATATTGACTCTTGATTCACCGTCAAAActgcaaaaact tttattttgtcACCGCAAGACACTCTTCTTCTAACACCGAAACACTGACA TAAAAAGGGATAAACAGTAATACCGTCAAACCCCCTTGcagaaaacaaac tttttcgaATAATTTTAACAAGGAccaaatttaagatttttagtACAATA TTGCGATCTCATTGCAATTTGACTACAACCGATCTTGCTAATTGGTAGTG TGAAATGCTTTTATCAGACTTGCACCAAACCAAAGTGTGTTAGGGCATGG TGGTGATGGACTCTCTACTTTCACTGGATGTCTTCTTCCTTTTAATCGAT CTTccgttttttaagattttcgttatattaagaatattcaattaaggaaa atacatattttttaagCTTTGGTCGGGACCCGTAAATTTTCTTGATTACG ATGATGACACCTGGGAAAACAGTCATGACTTTAATTGGTTTCATCCGTCt aattcttttctttcttttctagaTGGATAAAACcgtttggaaatttttaa ttatctCCAGGTGGTTATAGTTTAAAGCAACAAAAATATGATCGTTATTT TCCCCTTTAATGAAACTTCCGGGGTATTCATCATTAATACATAAACACCG TCATCGTCGTTAACCTTGCGATCTGGGTCAAGACAGTGTTTTTTTCGAAA CATATacataggctacgtcatatcttccttcgtttcaagcgtaaaactcc tttcgggatatgagcactgctcttcttttcaatattgaaattctccggat acatcacatgcgcactgaggttttaatgaaacaatagagagtttagaaac ctaagccaatcagctgtgttttaaacattcttttatttgaaatctctatt gataaacatcttttgtgaaagttgtctattacgtttaaacctattaataa gcaattcccggtgggggttacTAGTGGCCGTCTaaagcagtgcctataga ccaagagtaaggcctaaaagcctggagctgtctattgtgtagactaataT TACATAACATAAACAATacatataatgttgaaaatgcTCAGGTTGTCAAA AAAGTCTTTGGTAGTTCAAGATTCAGAAGACTATTGAATGATCTGCTCTT CAGAAGTAAAGAAAATGACGATAATTAGAAACCAGAATGAGATCGGCGTT AAAGAATACTTGAATCTCAGCAAAATAATCCAAGAAAAACTTTTCGATTA TTTGGTCAAAGATATCAAAATCGAAAATGGATGGAAGGTTTTAGATATCG GATGTGGCACTGGAAATAATAGTTTCAAACTTTCCCAGATGGTTGGTGAG CAAGGCAAAGTTGTTGCTATTGATCCTATCAAAGACCGAATAACTGAAGC CAATTCTAGTTATAGCTCTCCAAATCTACGTTTCTATGAGGGCTCAGCAA ACGATGTTGCCAGATTTGGAAGTGATTTTGATTTGGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068783TCONS_00068783Clytia hemisphaericatranscript
TCONS_00068784TCONS_00068784Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068783-proteinTCONS_00068783-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:398842..406178 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.27 0.39 0.47 0.37 3.86 2.69 31.17 34.53 10.51 9.36 6.91 7.18 7.88 7.35 1.53 1.37 2.88 2.65 6.57 7.55 30.48 27.95 12.56 17.25 24.15 22.21 31.52 42.59 24.42 22.27