TCONS_00003352-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003352-protein
Unique NameTCONS_00003352-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length917

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003352-protein ID=TCONS_00003352-protein|Name=TCONS_00003352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=917bp
MEQHPPPNWYQRKVQLYDNHFLKLEDEENILLGTFCLDGLRTNYLLSQEE
NDQDALYLKLYEFNEKQKRFKKEKYIFGEVLVSVAYSRYSKNYGVEDIIW
KGNLSTKHFVEKTKLEFNFESLDKLGKVRFGVDFTKHTVHICVYLTPTAI
SPLENVIDEDGVNQQKHSGLKDSLKWVIQYFYPLKDELVQFDTDRPKKKS
VEELYKFVQEHSKDHLKDMDDFVLAKYQASNLLPTLRNYQAKAIHWMVCQ
EKFDHSIGNEEGMHPHWQDVTFVNGEHAYLNVYSGKLVKEFPKPTLFPRG
GILADEMGLGKTVEVLALHFNNPRPEQQKLQDKLNDQRKRSLSHDHDYLP
LKMLKTGGINDMPVLYVPPSGSTHQASNQKKAKSTAYKNDYQQYIDGTFN
PTLCCICSQAVKDERVQCNKCPNIFHLGCSGYGETALEDYDCPHCSMKEM
VQSHCTLIVCPDTLQQQWYNEIKMHVKKDTIKYMVYEGVKIHKFLPPKVL
AEYDIIITSFNTLRQDFNYVKADDACRRLRHRKRYAVLPCPLLAINFWRM
AIDEAQMVEADNTKLAEMCLRISAVHRWCVTGTPFKRGMEDIYGLLLFLG
VKPYSDKLWWHRALLDHHQSGDHLPLFDTLAKITWRSCKDDVIDQIRIPK
QTEYTTWLQLSAIERHYYQKEFDYQLKQKDDALKFIPNRSVKISDLAKNE
LNKFLWPLLQLRQASVHPGVVTNGSVNFEKKCVSMDKVLLKLIESNKLEC
EEAHRKLICALNGLAGIAILKRDHEEAARLYQDAIKSWNRTELKTDSLQK
LHTLHNLMDLQETNKLSEETCQGVQWSKLLEEKNVIRNEYMANVNNKMAN
TNHNFKEYQGELLDAENKLEELGIDWWLEVLDTGEQHEQVKNSFHAKILD
EIESVTGHCHIQLSGRY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001855XLOC_001855Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003352TCONS_00003352Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001965Znf_PHD
IPR000330SNF2_N
IPR011991WHTH_DNA-bd_dom
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 841..875
NoneNo IPR availableGENE3D3.40.50.10810coord: 237..705
e-value: 9.8E-42
score: 142.3
NoneNo IPR availableCDDcd15517PHD_TCF19_likecoord: 403..445
e-value: 3.78707E-5
score: 41.3799
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 232..620
e-value: 1.2E-14
score: 64.7
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 403..446
e-value: 8.7E-4
score: 28.6
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 239..720
e-value: 3.8E-79
score: 265.9
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 736..825
e-value: 1.6E-4
score: 21.4
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 404..445
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 401..448
score: 8.573
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 378..448
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 453..621
coord: 297..328
coord: 203..252

Blast
[Close]
BLAST of TCONS_00003352-protein vs. Swiss-Prot (Human)
Match: SHPRH (E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2)

HSP 1 Score: 372.474 bits (955), Expect = 4.979e-110
Identity = 197/490 (40.20%), Postives = 294/490 (60.00%), Query Frame = 0 
Query:  405 CICS---QAVKDERVQCNKCPNIFHLGCSGYGETALE--DYDCPHCSMK-EMVQSHCTLIVCPDTLQQQWYNEIKMHVKKDTIKYMVYEGVKIHKFLPPKVLAEYDIIITSFNTLRQDFNYV-----KADDACRRLRHRKRYAVLPCPLLAINFWRMAIDEAQMVEADNTKLAEMCLRISAVHRWCVTGTPFKRGMEDIYGLLLFLGVKPYSDKLWWHRALLDHHQSGDHLPLFDTLAKITWRSCKDDVIDQIRIPKQTEYTTWLQLSAIERHYYQKEFDYQLKQKDDALKFIPNRSVKISDLAKNELNKFLWPLLQLRQASVHPGVVTNGSVNFEKKCVSMDKVLLKLIESNKLECEEAHRKLICALNGLAGIAILKRDHEEAARLYQDAIKSW--NRTELKTDSLQKLHTLHNLMDLQETNKLSEETCQGVQWSKLLEEKNVIRNEYMANVNNKMANTNHNFKEYQGELLDAENKLEELGIDWWLEVL 881
            CIC    Q  +  RVQC KC    H  C  Y E  L+   + CPHC +  E V +  TLI+ P ++  QW +EI  HV+  +++ +VY+GVK   FL P  LAE DI+I +++ LR + NYV      ++D  RRLR++KRY  +P PL+A+ +WR+ +DEAQMVE    K AEM  R+S ++RWC++GTP +RG+ED++GL++FLG++PY  K WW R L   +   +   L+  +AKI WRS K DVIDQI+IP QTE   WL  S +ERH+Y ++ +   +     L+ I + ++K+S L +  +   L+PLL+LRQA  HP  V    +  +K  ++M+++L  L +    ECEEAHR+L+CALNGLAGI I+K ++  AA LY++ ++S   ++ +LKTDSLQ+LH  HNLM+L             ++  +L EE   +R  YM+  N ++A         Q  + + + K+      WWL V+
Sbjct:  661 CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELNYVDIPHSNSEDG-RRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLIARHPG--IPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHELQRKIHS-NSPWWLNVI 1146

HSP 2 Score: 94.7449 bits (234), Expect = 1.322e-19
Identity = 53/135 (39.26%), Postives = 75/135 (55.56%), Query Frame = 0 
Query:  201 VEELYKFVQEHSKDHLKDMDDFVLAKYQASNLLPTLRNYQAKAIHWMVCQEKFDHSIGNEEGMHPHWQDVTFVNGEHAYLNVYSGKLVKEFPKPTLFPRGGILADEMGLGKTVEVLALHFNNPRPEQQKLQDKLN 335
            ++ELY FV++  +   + +        Q   L+P LR YQ +A++WM+ QE F  S   E  +H  W+++    G   Y N Y+G +++E+P       GGILADEMGLGKTVEVLAL   + R  Q   QD L 
Sbjct:  273 IDELYHFVKQTHQQETQSIQ----VDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALILTHTR--QDVKQDALT 401
The following BLAST results are available for this feature:
BLAST of TCONS_00003352-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SHPRH4.979e-11040.20E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens ... [more]
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