TCONS_00003752-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003752-protein
Unique NameTCONS_00003752-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003752-protein ID=TCONS_00003752-protein|Name=TCONS_00003752-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MDKIRTKATGLPDGWVKEVVVRKNGASAGKSDVYYYSPEGRKCRSKPQMM
QYLPDNFDIDNFDFRGSSNTDRLLKKRNKRKNGFNFGKEFNIPGSSSKPT
RQTKKSRENIPISVLHTVNVENDRRKREVKRVPRMEMESKRRRAEALTQR
HSKPKQLFWQSRLQHLNTRNKLTEKPTEPAKLDNVMKNLLPGSNNQSLLN
SLWYSLFLNNKVSGQHASLNALRKHPTALVNPDQPFAAPFNVNEELLREQ
ERSVEMARRKLCEAQELLKALQDEDMEFDDLDDL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002091XLOC_002091Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003752TCONS_00003752Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001739Methyl_CpG_DNA-bd
IPR025884MeCpG-bd_2/3_C_dom
IPR016177DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001739Methyl-CpG DNA bindingSMARTSM00391TAM_2coord: 1..76
e-value: 2.2E-8
score: 43.9
IPR001739Methyl-CpG DNA bindingPFAMPF01429MBDcoord: 5..70
e-value: 2.6E-17
score: 62.2
IPR001739Methyl-CpG DNA bindingPROSITEPS50982MBDcoord: 1..69
score: 18.627
IPR025884Methyl-CpG binding protein 2/3, C-terminal domainPFAMPF14048MBD_Ccoord: 176..264
e-value: 7.9E-14
score: 52.0
NoneNo IPR availableGENE3D3.30.890.10coord: 2..181
e-value: 2.2E-25
score: 88.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..108
NoneNo IPR availableCDDcd00122MBDcoord: 11..64
e-value: 5.88566E-18
score: 74.6681
IPR016177DNA-binding domainSUPERFAMILY54171DNA-binding domaincoord: 9..73

Blast
[Close]
BLAST of TCONS_00003752-protein vs. Swiss-Prot (Human)
Match: MBD2 (Methyl-CpG-binding domain protein 2 OS=Homo sapiens GN=MBD2 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 8.493e-37
Identity = 97/290 (33.45%), Postives = 158/290 (54.48%), Query Frame = 0 
Query:    5 RTKATGLPDGWVKEVVVRKNGASAGKSDVYYYSPEGRKCRSKPQMMQYLPDNFDIDNFDFR-GSSNTDRLLKKRNKRKN---GFNFGK-EFNIPGSSSKPTRQTKKSRENIPISVLHTVNVENDRRKREVKRVPRMEMESKRRRAEALTQRHSKPKQLFWQSRLQHLNTRNKLTEKPTEPAKLDNVMKNLLPGSNNQSLLNSLWYSLFLNNK-VSGQHASLNALRKHPTALVNPDQPFAAPFNVNEELLREQERSVEMARRKLCEA--QELLKALQDE---DMEFDDLDD 283
            R     LP GW KE V+RK+G SAGKSDVYY+SP G+K RSKPQ+ +YL +  D+ +FDFR G     +L K + + +N     N GK + N    ++ P RQT    +     V    N  +++ K + +R+                  + +P+QLFW+ RLQ L+  + +TE+  +  +L   ++ + PGSN+++LL+++  +L  ++  ++GQ ++  A+ K+P   +N  QP    F V +E +R+QE  V+  R+KL EA   ++L    D    D+E D  D+
Sbjct:  149 RMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMPSKLQKNKQRLRNDPLNQNKGKPDLN----TTLPIRQTASIFKQ---PVTKVTNHPSNKVKSDPQRM------------------NEQPRQLFWEKRLQGLSASD-VTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHTSSAPITGQVSA--AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMADILSRAADTEEMDIEMDSGDE 410
The following BLAST results are available for this feature:
BLAST of TCONS_00003752-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MBD28.493e-3733.45Methyl-CpG-binding domain protein 2 OS=Homo sapien... [more]
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