TCONS_00003842-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003842-protein
Unique NameTCONS_00003842-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003842-protein ID=TCONS_00003842-protein|Name=TCONS_00003842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
KNKKHLQRGTMSTNNSSEVIFLLSPGELQFFNVSLPIISIVGLFINVVVI
WVIVTDRGMRQTTASIYIVNLAVADILVLIVGVPLWIYQLVSKNAEDWSC
QLTFGLSYVTSVVSVLTLAIISYDRFHCVMQPFSQDSGKRLAYKVVSISW
LVGSFLAIPFFVGYKAQHHEVTFQISAFCVYTRFFRQEVMITDLIIIVLL
IIISTYFYYKLCRVARAQAALIKKDLNVMKRVNMDKINTQIKGHKIMKAT
RTLGFILGAMVLCWIPFLIISIIDSFDVRYFSVFTLKLLGTLTYLNSIFN
PIIYTFMTRAFKESITKRFFRFKRKLSRTAMPDIKRCTSHV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002151XLOC_002151Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003842TCONS_00003842Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 64..85
score: 34.76
coord: 286..312
score: 32.77
coord: 107..129
score: 27.07
coord: 141..162
score: 20.34
coord: 249..273
score: 28.84
coord: 30..54
score: 22.89
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 46..304
e-value: 1.4E-39
score: 135.8
IPR000276G protein-coupled receptor, rhodopsin-likePROSITEPS00237G_PROTEIN_RECEP_F1_1coord: 113..129
NoneNo IPR availableGENE3D1.20.1070.10coord: 2..340
e-value: 8.9E-57
score: 191.9
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 9..327
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 45..304
score: 34.675

Blast
[Close]
BLAST of TCONS_00003842-protein vs. Swiss-Prot (Human)
Match: ADRB2 (Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 7.373e-18
Identity = 80/291 (27.49%), Postives = 133/291 (45.70%), Query Frame = 0 
Query:   33 VSLPIISIVGLFINVVVIWVIVTDRGMRQTTASIYIVNLAVADILVLIVGVPLWIYQLVSK--NAEDWSCQLTFGLSYVTSVVSVLTLAIISYDRFHCVMQPFSQDS--GKRLAYKVVSISWLVG---SFLAIPFFVGYKAQHHEVTFQISAFCVYTRFFRQEVMITDLII-IVLLIIISTYFYYKLCRVARAQAALIKKDLNVMKRVNMDKINTQIK-GH----------KIMKATRTLGFILGAMVLCWIPFLIISIIDSFDVRYFSVFTLKLLGTLTYLNSIFNPIIY 304
            +SL +++IV  F NV+VI  I     + QT  + +I +LA AD+++ +  VP     ++ K     ++ C+    +  +    S+ TL +I+ DR+  +  PF   S   K  A  ++ + W+V    SFL I     Y+A H E     +       F  Q   I   I+   + ++I  + Y ++ + A+ Q   I K        N+ ++    + GH          K  KA +TLG I+G   LCW+PF I++I+              LL  + Y+NS FNP+IY
Sbjct:   40 MSLIVLAIV--FGNVLVITAIAKFERL-QTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHW-YRATHQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIY 326
The following BLAST results are available for this feature:
BLAST of TCONS_00003842-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADRB27.373e-1827.49Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB... [more]
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