TCONS_00003960-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003960-protein
Unique NameTCONS_00003960-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1708

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003960-protein ID=TCONS_00003960-protein|Name=TCONS_00003960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1708bp
MEISVGKCFPVLVNFSSEIIDEKSLHQSFKKFGPVKKVQAMKEKGKHRSA
LVYFLNNEVAEMAAREMDGNTIKGEKIQTKGPSNQQTKKENQKSQTHEKS
STTTTKDITSASNHPKTPNVKNSQSAKFDWIDSDKEITDCYYFILNGVCK
PKQGTKCMYRHLEKLRHSTDVCEKWSKRTCKNRKCPKLHPSQKHELELAE
VKKKQLVRCSSHNAYKCLGECGKKNCNTHFQTEKGLQEHIVNSHSVCQEC
NAVFFNEEERLNHSHKNENQVTKNENDPQAAEPIGVFWDIENCQVPKGKS
ALAIVQKIRKTFYPGCREVEFMCVCDTTKEKKEVLEELNRSQINIIHINA
TSKNAADDKVKQALRRFGQTHTPPATIVLISGDINFISELSDLRHRNNIK
VILLHNQQASTVLKQTAHECHAFEHFTAGIQSSTTNTACNDGPKEILVSN
LPQGNKQFKNKINTKLKLLVDNTGGKITHLQVTEDSNKEFDNIAIIRFAD
AETARRAVSRLQNEVIFGAKIRAKLKSKASKQNGESNQNKSQQLQQQNLI
KSATPGQALNMSNTFAPMIPLMNPLPKPLLNGNGFLPLPYPIPPPPQLLQ
QAMLPVTTMGFPAMSNLAINKLAQQPALMMHQVSTGSNLKHQVKSKLAIL
DSPNLPTTSHKQYTAISNPSGHVEVLVQCSDKAMTSKDLKKEINTLINNH
YKNTLITIPTQKSGSWHLFIKFPKLLDALWFIYSTKQENEKFKCSLYPDL
LNANDPLMKLKIEVFELLFESNYQWVPLNEFLVRYKTSHKKALHVLDLDR
VKDLIYVDGKPQLQFVCLLRNSAGQRKVKLTPNLKKSVVEILKTHNRKVP
VASLPGLYWSYTKQTFADAQEGLTLTELVTSDEISLTGSSPQDQAMCFKR
EKPKKDQFHPLEDFRNDAIQLIKASPLFTVPINRVAPLYHQYFGRQLVLA
EYGFKEMSEIFKAFPDIFKIEQNKTIIFTKAYTKFLLQELLHHLLFTRHR
HQLPVSSLLTTFYRFHGYKLYYRNFGFDSFLDLVNSLDPEIFRIAGTGEN
KTLSLIRKSVKPDKDIIKTFANEVQQLVQNSPNKRVLIHSLSSDYFKHFG
RQLKLNDLGFNKLNDLIAAISNYFEIKGDRDGRYITFPRKGHDFETMLVE
LQTILNKNPDLLMLGIQLPDVYKKTMKKDLPIEPANLNHLYEKLPSSISV
IGQNSHRLLLYNNRADYPSLLFTEQMLELAYNCPHFEFTVQSMCEKMKEK
GIEASLERVSREIKKCDKFKVKASTSGKDSYREKTYWIAPEESQKLFERD
VLRLLYKEPDFKLPLNHVAKAFTKTYGKVLRVADFGVNKLAQILEKLPPG
FVEVEYPPEGGQPTMILGKLGQVCMECDSVIEEHCGSLLLCNFDAEYLKK
FGKHLLPKKLGFSKVKELLDCFSCVLKVYGENQTKFIVQKEKILNPPAKE
VHSPRASIGSTLSSASNSCSDSGSDIEIESDHDSDGASTKPINNDLLLFP
SEQDNPLSLNNNKSLSSEWWMMLDNNPNLPEPSLQPEQSFLADPDFDLDL
ISFTEFDDEDDVIRQGGIDDSTLPSPIIPPPHQLSYGELKQRDKSSSDNF
VDHLFSGEATAQEPDLMRMLVGRCPSPADIFSPQQQAMAATTSSTISDTY
SIFSPIKPSHQQSAAVGTDNVPYTQLLGDVFTDPHAPFSNANHRTIRPKI
AANFNKPL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002211XLOC_002211Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003960TCONS_00003960Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR029060PIN_domain-like
IPR025605OST-HTH/LOTUS_dom
IPR021139NYN_limkain-b1
IPR024582Marf1_cons_dom
IPR013087Znf_C2H2_type
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 2..80
e-value: 8.9E-4
score: 28.5
coord: 445..524
e-value: 0.053
score: 17.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 18..77
e-value: 1.1E-8
score: 34.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 9..84
score: 9.661
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 444..528
score: 11.042
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 14..84
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 475..534
IPR029060PIN domain-likeGENE3D3.40.50.1010coord: 273..427
e-value: 1.1E-13
score: 51.0
IPR025605OST-HTH/LOTUS domainPFAMPF12872OST-HTHcoord: 1067..1135
e-value: 1.3E-11
score: 44.1
coord: 911..973
e-value: 1.9E-6
score: 27.5
coord: 1380..1425
e-value: 0.0017
score: 18.1
coord: 1295..1362
e-value: 4.3E-4
score: 20.0
coord: 987..1051
e-value: 1.5E-6
score: 28.0
IPR025605OST-HTH/LOTUS domainPROSITEPS51644HTH_OSTcoord: 910..983
score: 12.633
IPR025605OST-HTH/LOTUS domainPROSITEPS51644HTH_OSTcoord: 1066..1140
score: 18.402
IPR025605OST-HTH/LOTUS domainPROSITEPS51644HTH_OSTcoord: 1143..1214
score: 8.431
IPR025605OST-HTH/LOTUS domainPROSITEPS51644HTH_OSTcoord: 984..1059
score: 8.524
IPR025605OST-HTH/LOTUS domainPROSITEPS51644HTH_OSTcoord: 1293..1370
score: 13.725
IPR021139NYN domain, limkain-b1-typePFAMPF01936NYNcoord: 284..420
e-value: 1.8E-17
score: 64.1
NoneNo IPR availableGENE3D3.30.70.330coord: 440..553
e-value: 4.4E-8
score: 32.7
coord: 11..109
e-value: 1.3E-11
score: 44.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1448..1503
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 527..548
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..124
NoneNo IPR availableCDDcd08824LOTUScoord: 1379..1435
e-value: 1.0301E-5
score: 44.1469
NoneNo IPR availableCDDcd10910limkain_b1_N_likecoord: 283..424
e-value: 2.16758E-46
score: 164.818
NoneNo IPR availableCDDcd08824LOTUScoord: 1067..1136
e-value: 1.27337E-10
score: 58.7845
IPR024582Marf1, conserved domainPFAMPF11608Limkain-b1coord: 446..536
e-value: 7.6E-14
score: 51.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 221..244
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 134..164
score: 6.305
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 166..192
score: 8.596

Blast
BLAST of TCONS_00003960-protein vs. Swiss-Prot (Human)
Match: MARF1 (Meiosis regulator and mRNA stability factor 1 OS=Homo sapiens GN=MARF1 PE=1 SV=6)

HSP 1 Score: 229.565 bits (584), Expect = 2.550e-60
Identity = 120/241 (49.79%), Postives = 162/241 (67.22%), Query Frame = 0
Query:  283 PIGVFWDIENCQVPKGKSALAIVQKIRKTFYPGCREVEFMCVCDTTKEKKEVLEELNRSQINIIHINATSKNAADDKVKQALRRFGQTHTPPATIVLISGDINFISELSDLRHRNNIKVILLHNQQASTVLKQTAHECHAFEHFTAGI--QSSTTNTACNDGPKEILVSNLPQGNKQFKNKINTKLKLLVDNTGGKITHLQVTEDSNKEFDNIAIIRFADAETARRAVSRLQNEVIFGAKI 521
            PIGVFWDIENC VP G+SA A+VQ+IR+ F+ G RE EF+CVCD +KE KEV++ELN  Q+ + HINAT+KNAADDK++Q+LRRF  THT PAT+VL+S D+NF  ELSDLRHR+   +IL+H  QAS  L   A+E   FE F + +  +       C+     + V NLP  NK  K+ ++ +L+ L DN GGK+  L +T  S       AI+RF + ++A RA  R++NE +FG +I
Sbjct:  352 PIGVFWDIENCSVPSGRSATAVVQRIREKFFKGHREAEFICVCDISKENKEVIQELNNCQVTVAHINATAKNAADDKLRQSLRRFANTHTAPATVVLVSTDVNFALELSDLRHRHGFHIILVHKNQASEALLHHANELIRFEEFISDLPPRLPLKMPQCH---TLLYVYNLP-ANKDGKS-VSNRLRRLSDNCGGKV--LSITGCS-------AILRFINQDSAERAQKRMENEDVFGNRI 578          

HSP 2 Score: 103.99 bits (258), Expect = 5.262e-22
Identity = 122/546 (22.34%), Postives = 235/546 (43.04%), Query Frame = 0
Query:  838 VVEILKTHNRKVPVASLPGLYWSYTK--QTFADAQEGLTLTELVTS-DEISLTGSSPQDQAMCFKREKPKKDQFHP-------------LEDFRNDAIQLIKASPLFTVPINRVAPLYHQYFGRQLVLAEYGFKEMSEIFKAFPDIFKI---EQNKTIIFT-KAYTKFLLQELLHHLLFTRHRHQLPVSSLLTTFYRFHGYKLYYRNFGFDSFLDLVNSLDPEIFRIAGTGENKTLSLIRKSVKPDKDIIKT--FANEVQQLVQNSPNKRVLIHSLSSDYFKHFGRQLKLNDLGFNKLNDLIAAISNYFEIKGDRDGRYITFPRKGHDFETMLVELQTILNKNPDLLMLGIQLPDVYKKTMKKDLPIEP---ANLNHLYEKLPSSISVIGQNSHRLLLYNNRADYPSLLFTEQMLELAYNCPHFEFTVQSMCEKMKE----------KGIEASLERVSREIKKCDKFKVKASTSGKDSYREKTYWIAPEESQKLFERDVLRLLYKEPDFKLPLNHVAKAFTKTYGKVLRVADFGVNKLAQILEKLP 1348
            V  +L+TH   VP+ S P  Y +     +   + Q G+ L   +T    +++  +    + + +   KP      P             L  F  + I L+K+ P   +PI+   P YH +F +Q  +++YG+ ++ E+ +A P + +I      + +  T +A  K   Q+LL  LL ++   Q+ V      ++           +G    +D+V+ + P+        +N+ +  I K  +   +I +T  F+ +V  L+++ P+ R+  +     Y  HFGRQ KL   GF KL +L  AI +  ++    + + +T   +   F+ +  +   +L    D  ++   L   Y KT      ++    ++++ L +KL   + V    S R +   NR    SL  T Q+L L  +   +E T     E++K              E     ++ E+ K   + V+  T+ K    E+   +    S  LF ++V  LL+     ++ L+  + A+TK  G+ L+   +G + + ++L  +P
Sbjct: 1011 VHSLLQTHEGTVPLLSFPDCYIAEFGDLEVVQENQGGVPLEHFITCVPGVNIATAQNGIKVVKWIHNKPPPPNTDPWLLRSKSPVGNPQLIQFSREVIDLLKSQPSCVIPISHFIPSYHHHFAKQCRVSDYGYSKLIELLEAVPHVLQILGMGSKRLLTLTHRAQVKRFTQDLL-KLLKSQASKQVIVREFSQAYHWCFSKDWDVTEYGVCELIDIVSEI-PDTTICLSQQDNEMVICIPKRERTQDEIERTKQFSKDVVDLLRHQPHFRMPFNKFIPSYHHHFGRQCKLAYYGFTKLLELFEAIPDTLQVLECGEEKILTL-TEVERFKALAAQFVKLLRSQKDNCLMMTDLLTEYAKTFGYTFRLQDYDVSSISALTQKLCHVVKVADIESGRQIQLINRKSLRSL--TAQLLVLLMS---WEGTTHLSVEELKRHYESTHNTPLNPCEYGFMTLT-ELLKSLPYLVEVFTNDK---MEECVKLT---SLYLFAKNVRSLLHTYHYQQIFLHEFSMAYTKYVGETLQPKTYGHSSVEELLGAIP 1541          

HSP 3 Score: 92.0485 bits (227), Expect = 2.381e-18
Identity = 88/396 (22.22%), Postives = 164/396 (41.41%), Query Frame = 0
Query:  748 PDLLNANDP-----LMKLKIEVFELLFESNYQWVPLNEFLVRYKTSHKKALHVLDLDRVKDLIYVDGKPQLQFVCLLRNSAGQRKVKLT-----PNLKKSVVEILKTH-NRKVPVASLPGLY-WSYTKQTFADAQEGLTLTELVTSDEISLTGSSPQDQAM--CFKREKPKKDQFHPLEDFRNDAIQLIKASPLFTVPINRVAPLYHQYFGRQLVLAEYGFKEMSEIFKAFPDIFKI---EQNKTIIFTKAYTKFLLQELLHHLLFTRHRHQLPVSSLLTTFYRFHGYKLYYRNFGFDSFLDLVNSLDPEIFRIAGTGENKTLSLIRKSVKPDKDIIKTFANEVQQLVQNSPNKRVLIHSLSSDYFKHFGRQLKLNDLGFNKLNDLIAAISNYFEI 1126
            P LL +  P     L++   EV +LL       +P++ F+  Y     K   V D    K +  ++  P    V  +     +R + LT         + ++++LK+  +++V V      Y W ++K           L ++V+    +    S QD  M  C  + +  +D+    + F  D + L++  P F +P N+  P YH +FGRQ  LA YGF ++ E+F+A PD  ++    + K +  T+      L      LL ++  + L ++ LLT + +  GY    +++   S   L   L   + ++A     + + LI +     K +    A  +  L+       + +  L   Y       L   + GF  L +L+ ++    E+
Sbjct: 1086 PWLLRSKSPVGNPQLIQFSREVIDLLKSQPSCVIPISHFIPSYHHHFAKQCRVSDYGYSKLIELLEAVPH---VLQILGMGSKRLLTLTHRAQVKRFTQDLLKLLKSQASKQVIVREFSQAYHWCFSKDWDVTEYGVCELIDIVSEIPDTTICLSQQDNEMVICIPKRERTQDEIERTKQFSKDVVDLLRHQPHFRMPFNKFIPSYHHHFGRQCKLAYYGFTKLLELFEAIPDTLQVLECGEEKILTLTEVERFKALAAQFVKLLRSQKDNCLMMTDLLTEYAKTFGYTFRLQDYDVSSISALTQKLC-HVVKVADIESGRQIQLINR-----KSLRSLTAQLLVLLMSWEGTTHLSVEELKRHYESTHNTPLNPCEYGFMTLTELLKSLPYLVEV 1472          
The following BLAST results are available for this feature:
BLAST of TCONS_00003960-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MARF12.550e-6049.79Meiosis regulator and mRNA stability factor 1 OS=H... [more]
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