TCONS_00046518-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00046518-protein
Unique NameTCONS_00046518-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length200

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00046518-protein ID=TCONS_00046518-protein|Name=TCONS_00046518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MDTLGQEETSQPSAVSRFFLSISQRFQVILDKTVPHGLYRWVFSLFLAIT
YIIRVYLLQGWYIVTYALGIYILNLFIGFLTPRIDPSNQNRDFFSEISDD
EEGPGLPTKRDEEFKPFIRKLPEFKFWYSCSKSIVIATICTFFEMFNVPV
FWPILVMYFCILFVLTMKRQIKHMIKYRYLPFTHGKRKYQGKPDGDVMMQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_029693XLOC_029693Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00046518TCONS_00046518Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004932Rer1
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004932Retrieval of early ER protein Rer1PIRSFPIRSF016013AtER_Rer1pcoord: 1..199
e-value: 1.0E-84
score: 280.9
IPR004932Retrieval of early ER protein Rer1PFAMPF03248Rer1coord: 21..190
e-value: 1.0E-75
score: 253.1

Blast
[Close]
BLAST of TCONS_00046518-protein vs. Swiss-Prot (Human)
Match: RER1 (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 8.818e-89
Identity = 119/194 (61.34%), Postives = 152/194 (78.35%), Query Frame = 0 
Query:    2 DTLGQEETSQPSAVSRFFLSISQRFQVILDKTVPHGLYRWVFSLFLAITYIIRVYLLQGWYIVTYALGIYILNLFIGFLTPRIDPSNQNRDFFSEISDDEEGPGLPTKRDEEFKPFIRKLPEFKFWYSCSKSIVIATICTFFEMFNVPVFWPILVMYFCILFVLTMKRQIKHMIKYRYLPFTHGKRKYQGKPDG 195
            D++G+    +PS V RFF  + Q +Q  LDK+ P+   RWV +L L+  Y+IRVYLLQGWYIVTYALGIY LNLFI FL+P++DPS         + D ++GP LPTK++EEF+PFIR+LPEFKFW++ +K I++A +CTFF+ FNVPVFWPILVMYF +LF +TMKRQIKHMIKYRY+PFTHGKR+Y+GK D 
Sbjct:    5 DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPS--------LMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPFTHGKRRYRGKEDA 190
The following BLAST results are available for this feature:
BLAST of TCONS_00046518-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RER18.818e-8961.34Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
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