TCONS_00046579-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00046579-protein
Unique Name	TCONS_00046579-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	468

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00046579-protein ID=TCONS_00046579-protein|Name=TCONS_00046579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MREIVSVQIGQCGNQIGEKFWETICLDHQIPLDGKISQQALSDPREDILK
PRGKYEVYFKEIGTYGGSEVQFVPRSVLVDMEPGVLDSIRGGKLRDLFKP
DHMLNGQDGSCNNWAKGYLHQGGEYIEQTMEIIRRECESCDCIQAFQLAH
SVGGGTGSGFGSLLLCRLYDEFPDILLMNASVLPSTQVSDVVVEPYNTIL
SLAYLVDYSNGVFCIDNEALYKICMNKLKVERINYGTINELIASTLGGAT
TSLRYPGQLNSDVRKLSVNMVPFPRLHFYMTGLSPLVHDYVKPYLKNDIA
EVTRDLFEPSNMLCDCDPRSGRYLTFAAIYRGQTNTREIEETIMNFQNKN
SSSFVEWIPHNAKVATCDVPLKGQRLKATFIANNTSIQNILRRSRDRYFK
MMRRKAFLHWYTAQGMEELQFMEAEANIVDIISEYEQYTHAPVDDDIPSE
YCELEDSLEELDSGFGGL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_029728	XLOC_029728	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00046579	TCONS_00046579	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002453	Beta_tubulin
IPR000217	Tubulin
IPR018316	Tubulin/FtsZ_2-layer-sand-dom
IPR003008	Tubulin_FtsZ_GTPase
IPR013838	Beta-tubulin_BS
IPR017975	Tubulin_CS
IPR008280	Tub_FtsZ_C

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Molecular Function**
Term	Definition
GO:0005200	structural constituent of cytoskeleton
GO:0005525	GTP binding
GO:0003924	GTPase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002453	Beta tubulin	PRINTS	PR01163	BETATUBULIN	coord: 165..177 score: 25.54 coord: 278..294 score: 33.82 coord: 324..342 score: 42.77 coord: 342..356 score: 62.86 coord: 101..112 score: 41.24 coord: 225..237 score: 29.49 coord: 425..443 score: 47.1 coord: 258..271 score: 76.12 coord: 121..139 score: 32.96 coord: 360..383 score: 43.76 coord: 243..252 score: 33.2
IPR000217	Tubulin	PRINTS	PR01161	TUBULIN	coord: 119..143 score: 30.53 coord: 164..185 score: 34.02 coord: 106..117 score: 59.16 coord: 64..83 score: 41.24 coord: 189..202 score: 67.85 coord: 383..411 score: 44.43 coord: 203..223 score: 44.16 coord: 10..30 score: 62.21 coord: 145..163 score: 67.95
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	SMART	SM00865	Tubulin_C_4	coord: 259..396 e-value: 5.7E-19 score: 79.0
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	PFAM	PF03953	Tubulin_C	coord: 274..393 e-value: 1.4E-34 score: 118.9
IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	GENE3D	3.30.1330.20		coord: 277..386 e-value: 3.4E-36 score: 123.5
IPR003008	Tubulin/FtsZ, GTPase domain	SMART	SM00864	Tubulin_4	coord: 55..257 e-value: 4.3E-41 score: 152.5
IPR003008	Tubulin/FtsZ, GTPase domain	PFAM	PF00091	Tubulin	coord: 3..224 e-value: 1.3E-63 score: 214.7
IPR003008	Tubulin/FtsZ, GTPase domain	GENE3D	3.40.50.1440		coord: 1..276 e-value: 1.1E-98 score: 329.3
IPR003008	Tubulin/FtsZ, GTPase domain	SUPERFAMILY	52490	Tubulin nucleotide-binding domain-like	coord: 1..256
None	No IPR available	GENE3D	1.10.287.600		coord: 387..460 e-value: 1.3E-19 score: 69.7
None	No IPR available	CDD	cd02187	beta_tubulin	coord: 2..438 e-value: 0.0 score: 583.759
IPR013838	Beta tubulin, autoregulation binding site	PROSITE	PS00228	TUBULIN_B_AUTOREG	coord: 1..4
IPR017975	Tubulin, conserved site	PROSITE	PS00227	TUBULIN	coord: 153..159
IPR008280	Tubulin/FtsZ, C-terminal	SUPERFAMILY	55307	Tubulin C-terminal domain-like	coord: 257..440

Blast

[Close]

BLAST of TCONS_00046579-protein vs. Swiss-Prot (Human)
Match: TBB6 (Tubulin beta-6 chain OS=Homo sapiens GN=TUBB6 PE=1 SV=1)

HSP 1 Score: 466.463 bits (1199), Expect = 1.876e-162
Identity = 222/446 (49.78%), Postives = 313/446 (70.18%), Query Frame = 0

Query:    1 MREIVSVQIGQCGNQIGEKFWETICLDHQI-PLDGKISQQALSDPREDILKPRGKYEVYFKEIGTYGGSEVQFVPRSVLVDMEPGVLDSIRGGKLRDLFKPDHMLNGQDGSCNNWAKGYLHQGGEYIEQTMEIIRRECESCDCIQAFQLAHSVGGGTGSGFGSLLLCRLYDEFPDILLMNASVLPSTQVSDVVVEPYNTILSLAYLVDYSNGVFCIDNEALYKICMNKLKVERINYGTINELIASTLGGATTSLRYPGQLNSDVRKLSVNMVPFPRLHFYMTGLSPLVHDYVKPYLKNDIAEVTRDLFEPSNMLCDCDPRSGRYLTFAAIYRGQTNTREIEETIMNFQNKNSSSFVEWIPHNAKVATCDVPLKGQRLKATFIANNTSIQNILRRSRDRYFKMMRRKAFLHWYTAQGMEELQFMEAEANIVDIISEYEQYTHAPVDD 445
            MREIV +Q GQCGNQIG KFWE I  +H I P  G +   AL   R           VY+ E      S  ++VPR+ LVD+EPG +DS+R G    LF+PD+ + GQ G+ NNWAKG+  +G E ++  ++++R+ECE CDC+Q FQL HS+GGGTGSG G+LL+ ++ +EFPD ++   SV+PS +VSD VVEPYN  LS+  LV+ ++  +CIDNEALY IC   LK+    YG +N L+++T+ G TTSLR+PGQLN+D+RKL+VNMVPFPRLHF+M G +PL     + Y    + E+T+ +F+  NM+  CDPR GRYLT A ++RG  + +E++E ++  Q+KNSS FVEWIP+N KVA CD+P +G ++ +TFI N+T+IQ + +R  +++  M RRKAFLHW+T +GM+E++F EAE+N+ D++SEY+QY  A  +D
Sbjct:    1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSALQLER---------INVYYNE-----SSSQKYVPRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGHYTEGAELVDAVLDVVRKECEHCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDARNMMAACDPRHGRYLTVATVFRGPMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAND 432

The following BLAST results are available for this feature:

BLAST of TCONS_00046579-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00046579-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TBB6	1.876e-162	49.78	Tubulin beta-6 chain OS=Homo sapiens GN=TUBB6 PE=1...	[more]

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TCONS_00046579-protein (polypeptide) - C. hemisphaerica