TCONS_00047250-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047250-protein
Unique NameTCONS_00047250-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047250-protein ID=TCONS_00047250-protein|Name=TCONS_00047250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MENCMKECRVPLLWNANGSIEVIQQDDYSAEEAEKILKILEGGYSDDKPL
PKSCAPSPSPSIDLSNDRDYHERMLSLDETSKNHHPHNHLTSSLCLDEIN
YHINKRNLVPAAITSRTFRPNFSHLKQHESRRLPQQQQHQTQQHVQGSPI
DRVYSCPICAKKFSRKFNLNTHIKCVHSDDKDYICQFCQRAFNHSSNLRK
HIKTVHGEEKRLPCPECKKPFKHSEALKSHLRVIHGKNSF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030095XLOC_030095Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047250TCONS_00047250Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 212..235
e-value: 0.0036
score: 26.5
coord: 183..206
e-value: 9.8E-4
score: 28.4
coord: 154..177
e-value: 6.6E-4
score: 29.0
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 156..177
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 214..235
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 185..206
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 154..182
score: 13.38
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 183..211
score: 13.297
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 212..235
score: 10.512
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 140..192
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 177..230
NoneNo IPR availableGENE3D3.30.160.60coord: 197..240
e-value: 8.4E-14
score: 51.2
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 183..206
e-value: 2.3E-5
score: 24.5
coord: 154..174
e-value: 8.3E-4
score: 19.6
coord: 213..235
e-value: 1.2E-5
score: 25.3
NoneNo IPR availableGENE3D3.30.160.60coord: 181..196
e-value: 1.4E-6
score: 27.7
NoneNo IPR availableGENE3D3.30.60.60coord: 44..161
e-value: 2.0E-5
score: 24.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..146
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 162..180
e-value: 2.3E-7
score: 30.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 156..218
score: 8.772

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047250-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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