TCONS_00047358-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047358-protein
Unique NameTCONS_00047358-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047358-protein ID=TCONS_00047358-protein|Name=TCONS_00047358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
MTDKGKTSSMKSEALVTIDETLQGIGFLIKCKKLNLEKANVTYKIDSTRT
QSRGYIFVYIGDLDAKEIADTPSDESYAPKATGSINSKLKAASNNPSIPP
TKSTSTVTRPPPNQNVKTSSITSKPSPRPATHIVDDNTRPSASSTNLPAF
GSEKPGVSTISTTSSGINDAYATVIRKKDLHPLFTLYPGMFNVVLLVDNA
ETVGGGRRKKEMAENLLKIGVKMEVRKLQLGDFLWIAKEKCGKQRELVLD
FILERKRMDDLASSIVDGRFKEQKFRLKSCGLKKLIYLVEKYGSSEHFVV
PETTLKQAVMNTQVVDGLFIKETTSIQDSVQYLRLMTNQLTRMYKDKILH
GVSMEDVKTIKSNHPFSDVIALEEQHLIQFDEFSSQTDKNKVLTCREMFV
KQLMQMKGVSAERAVAIVNLYPTPSCLMDALDQLPTNEQKMNIVTDLPFG
KARKKIGLPISRQLYAHYTMVDVPRD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030167XLOC_030167Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047358TCONS_00047358Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006166ERCC4_domain
IPR011335Restrct_endonuc-II-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0004518nuclease activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0004518 nuclease activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006166ERCC4 domainSMARTSM00891ERCC4_2coord: 194..293
e-value: 1.4E-22
score: 91.0
IPR006166ERCC4 domainPFAMPF02732ERCC4coord: 210..334
e-value: 3.1E-23
score: 82.6
NoneNo IPR availableGENE3D3.40.50.10130coord: 190..349
e-value: 2.9E-40
score: 136.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..161
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 191..338

Blast
[Close]
BLAST of TCONS_00047358-protein vs. Swiss-Prot (Human)
Match: MUS81 (Crossover junction endonuclease MUS81 OS=Homo sapiens GN=MUS81 PE=1 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 3.592e-72
Identity = 125/297 (42.09%), Postives = 183/297 (61.62%), Query Frame = 0 
Query:  184 FTLYPGMFNVVLLVDNAETVGGGRRKKEMAENLLKIGVKMEVRKLQLGDFLWIAKEKCGKQ----RELVLDFILERKRMDDLASSIVDGRFKEQKFRLKSCGLKKLIYLVEKYGSSEHFVVPETTLKQAVMNTQVVDGLFIKETTSIQDSVQYLRLMTNQLTRMYKDKILHGVSM-----EDVKTIKSNHPFSDVIALEEQHLIQFDEFSSQTDKNKVLTCREMFVKQLMQMKGVSAERAVAIVNLYPTPSCLMDALDQLPTNEQKMNIVTDLPFGKARKKIGLPISR---QLYAHY 468
              L PG + V+L VD  ET GGG R  E+   L ++ V   VRKL +GDF+W+A+E   +      ELVLD I+ERKR+DDL SSI+DGRF+EQKFRLK CGL++ +YLVE++GS  +  +PE+TL QAV NTQV+DG F+K T  I++S  YL L+T  L R+Y+   L           +   + S +P           L+ F +F++   KNK  + RE+F +QLMQ++GVS E+A A+V+ Y TP+ L+ A D   T +++  +++ +  G+ ++ +G  +SR   QLY  Y
Sbjct:  260 LELRPGEYRVLLCVDIGETRGGGHRP-ELLRELQRLHVTHTVRKLHVGDFVWVAQETNPRDPANPGELVLDHIVERKRLDDLCSSIIDGRFREQKFRLKRCGLERRVYLVEEHGSVHNLSLPESTLLQAVTNTQVIDGFFVKRTADIKESAAYLALLTRGLQRLYQGHTLRSRPWGTPGNPESGAMTSPNPLCS--------LLTFSDFNAGAIKNKAQSVREVFARQLMQVRGVSGEKAAALVDRYSTPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQLYCSY 547
The following BLAST results are available for this feature:
BLAST of TCONS_00047358-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MUS813.592e-7242.09Crossover junction endonuclease MUS81 OS=Homo sapi... [more]
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