TCONS_00047980-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047980-protein
Unique NameTCONS_00047980-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047980-protein ID=TCONS_00047980-protein|Name=TCONS_00047980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=765bp
MNWLFSIFLTIFMLSSVQCKAGWSGWSEWSSWGKGLCSGNKRIKTRSCTN
PLPTSGNYCHGENSRKEDGPIDGGLSDWTQWSTCEKPCGGSIVNRTRVCD
NPPPSRGGSQCFGKTVETKMECVMPCPESKTDGSWSPWSDWSSCPKQCTR
NGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCPVDGGFSQWSS
FTPCSRSCGTGFKSRYRLCNDPVPQGSTAQNCTGAFNEAKHCRLAICEGA
VNGKWGSWSQWSSCSQNVECFKGVRSRKRSCSNPAPSKGGDDCLGSADET
EICPKTNCKDNKPTQSPTLPVYPGDYIHRECGGVSTKKLGSTAPSALLNN
VLNFEKTKFMTGYYGEQKEEKDSIIKYCFEPYPPLTIREATNKVKSYNKS
TEIPNFKRPSVYDAPTLGFSVRVVNDGKYTIKGWDFGISEVDEYIPGKNL
KMEKVMFTYYSEGIHHGFLAKGQYQPVKNFKFDSVVFHNDTLFHSTMQGT
GKDIGLRGIFGALGIPADEDGSIKALERIGFWNIKFSPVSVSYDFKVAGI
TRITATKTFNGIPLHFEILFYKDIVAPKIAFGFAFDGESFGAVMDKLSGS
GGAGNAVSTFLNAFGVQPEIGIAYCPILLGDVSLSNSKFTKQPLASMFST
SVAAGLHAAAQLSIPKDCKGVPMCTILKKLVGPGASFKIQGYVGKDAYSL
TAGFYKIRLYKEFYMSKLQLALTFNSSNTNQIKLSFGIEFQIPVNTGHVM
LDGIKRKAQLNFGGM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030541XLOC_030541Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047980TCONS_00047980Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 273..284
score: 46.73
coord: 253..266
score: 50.19
coord: 292..303
score: 36.01
NoneNo IPR availableGENE3D2.30.90.10coord: 22..68
e-value: 0.031
score: 14.3
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 26..72
e-value: 3.8
score: 4.1
coord: 255..309
e-value: 1.3E-10
score: 51.2
coord: 135..190
e-value: 4.0E-9
score: 46.3
coord: 75..127
e-value: 4.5E-4
score: 29.5
coord: 195..248
e-value: 9.5E-10
score: 48.4
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 131..188
e-value: 1.5E-10
score: 40.8
coord: 71..126
e-value: 1.3E-11
score: 44.2
coord: 191..247
e-value: 3.2E-12
score: 46.0
coord: 251..308
e-value: 1.6E-12
score: 47.1
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 257..308
e-value: 4.2E-9
score: 36.4
coord: 136..190
e-value: 1.8E-6
score: 28.0
coord: 76..125
e-value: 6.7E-7
score: 29.3
coord: 196..247
e-value: 1.7E-7
score: 31.3
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 132..190
score: 11.218
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 23..69
score: 8.408
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 252..309
score: 12.047
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 72..127
score: 11.822
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 192..248
score: 11.54
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 71..119
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 132..181
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 251..303
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 188..247

Blast
BLAST of TCONS_00047980-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.453e-49
Identity = 110/313 (35.14%), Postives = 153/313 (48.88%), Query Frame = 0
Query:    2 NWLFSIFLTIFMLSSVQCKAGWSGWSEWSSWGKGLCSGNKRIKTRSCTNPLPTSGNY-CHG-----ENSRKEDGPIDGGLSDWTQWSTCEKPCGGSIVNRTRVCDNPPPSRGGSQCFGKTVETKMECVMPCPESKTDGSWSPWSDWSSCPKQCTRNGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCPVDGGFSQWSSFTPCSRSCGTGFKSRYRLCNDPVPQGSTAQNCTGAFNEAKHCRLAICEGAVNGKWGSWSQWSSCSQNVECFKGVRSRKRSCSNPAPSKGGDDCLGSADETEICPKTNC 308
            N + S+ + + ++  VQ   G+S WS W +     C    + ++R C  PLP +G   C G      N + +  P+DG  S+W+ W  C + CG     RTR C+NP    GG  C G  VE  M  + PCP     G+WS W  W +C + C   G     R R CN PPP FGG  C G  T+  +     CP+ G ++ W+S++ CS SCG G + R R C+DPVPQ    + C G+  ++  C    C    +G W  WS W +CS+   C  G   R R+C NP PS GG  C G   + + C    C
Sbjct: 4513 NLMGSVLVRVPVI--VQVHGGFSQWSAWRACSV-TCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESC---GKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYG-GRKCEGSDVQSDFCNSDPC--PTHGNWSPWSGWGTCSRT--CNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811          

HSP 2 Score: 183.726 bits (465), Expect = 9.677e-48
Identity = 103/291 (35.40%), Postives = 141/291 (48.45%), Query Frame = 0
Query:   26 WSEWSSWGKGL--CSGNKRIKTRSCTNP------LPTSGNYCHGENSRKEDGPIDGGLSDWTQWSTCEKPCGGSIVNRTRVCDNPPPSRGGSQCFGKTVETKMECVMPCPESKTDGSWSPWSDWSSCPKQCTRNGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCPVDGGFSQWSSFTPCSRSCGTGFKSRYRLCNDPVPQGSTAQNCTGAFNEAKHCRLAICEGAVNGKWGSWSQWSSCSQNVECFKGVRSRKRSCSNPAPSKGGDDCLGSADETEICPKTNC 308
            WSEWS W +    C    + +TR+C NP       P  GN            P+ G  S W  W TC + CG     R R+C+NPPP+ GGS C G   + ++     CP     G W+ W+ WS+C   C   GG   +R R C+ P P +GG+ C G+  +      D CP  G +S WS +  CSR+C  G   RYR C++P P  +  + C G  ++ + C   +C   V+G WGSW  WS CS +  C  G ++RKR C +P P KGG  C G   +   C    C
Sbjct: 4589 WSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP---IHGKWATWASWSACSVSC---GGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNP-PPSNGGRACGGPDSQIQRCNTDMC--PVDGSWGSWHSWSQCSAS--CGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868          

HSP 3 Score: 164.851 bits (416), Expect = 1.257e-41
Identity = 92/241 (38.17%), Postives = 122/241 (50.62%), Query Frame = 0
Query:   25 GWSEWSSWG--KGLCSGNKRIKTRSCTNPLPT-SGNYCHGENSR-----KEDGPIDGGLSDWTQWSTCEKPCGGSIVNRTRVCDNPPPSRGGSQCFGKTVETKMECVMPCPESKTDGSWSPWSDWSSCPKQCTRNGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCPVDGGFSQWSSFTPCSRSCGTGFKSRYRLCNDPVPQGSTAQNCTGAFNEAKHCRLAICEGAVNGKWGS 257
             WS W  WG     C    + + R C NP P   G+YC G  ++     + + PI G  + W  WS C   CGG    RTR C +P P  GG +C G  V++      PCP   T G+WSPWS W +C + C  NGG + +RYR C+ PPP  GG+ C G  ++      D+CPVDG +  W S++ CS SCG G K+R RLC+ PVP     + C G   +   C +  C G      GS
Sbjct: 4645 AWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP---THGNWSPWSGWGTCSRTC--NGGQM-RRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKG-GRPCPGDTTQVTRCNVQACPGGPQRARGS 4878          

HSP 4 Score: 118.627 bits (296), Expect = 4.802e-27
Identity = 64/174 (36.78%), Postives = 85/174 (48.85%), Query Frame = 0
Query:   23 WSGWSEWSSWGKGLCSGNKRIKTRSCTNPLPT-SGNYCHGENSRKE-----DGPIDGGLSDWTQWSTCEKPCGGSIVNRTRVCDNPPPSRGGSQCFGKTVETKMECVMPCPESKTDGSWSPWSDWSSCPKQCTRNGGSLIKRYRQCNMPPPMFGGKPCPGNSTEEIIGCFDVCP 190
            W+ W+ WS+     C G  R +TR C++P+P   G  C G + + +       P  G  S W+ W TC + C G  + R R CDNPPPS GG  C G   + +      CP    DGSW  W  WS C   C   GG    R R C+ P P+ GG+PCPG++T+        CP
Sbjct: 4703 WATWASWSACSVS-CGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP---VDGSWGSWHSWSQCSASC---GGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          
The following BLAST results are available for this feature:
BLAST of TCONS_00047980-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.453e-4935.14Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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