TCONS_00049037-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049037-protein
Unique NameTCONS_00049037-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049037-protein ID=TCONS_00049037-protein|Name=TCONS_00049037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MASSPNEDTTTISTSSSRDRGGYDVEFFENEPDDVTCSICLMVLCEPMQA
EECGHRFCRTCLEELRKSNNGILVCPEDRKIINVFRDRGKEREILNYVIC
CTNQEKGCNWTAPLRELQEHLEACQLLSIPCPRLMEGCQQSILRCTMDTH
INEECLYRPVLCPFCTTQYLLAQESDHFQECLRYPVTCQHCSEENPREMF
EKHVSEKCTKFLHPCLYGKFGCKQK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031147XLOC_031147Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049037TCONS_00049037Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 37..78
e-value: 2.7E-5
score: 33.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 37..79
score: 11.693
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 36..70
e-value: 2.0865E-4
score: 36.6548
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 37..76
e-value: 2.9E-8
score: 33.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 178..225
e-value: 4.3E-4
score: 19.9
coord: 91..138
e-value: 8.7E-13
score: 47.8
coord: 139..177
e-value: 1.1E-7
score: 31.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 26..84
e-value: 1.7E-9
score: 36.5
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 177..224
e-value: 1.8E-7
score: 31.7
coord: 120..168
e-value: 1.1E-6
score: 29.1
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 120..168
score: 11.666
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 177..225
score: 11.043
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 53..62
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 29..83
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 99..160

Blast
[Close]
BLAST of TCONS_00049037-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.461e-29
Identity = 65/200 (32.50%), Postives = 97/200 (48.50%), Query Frame = 0 
Query:   22 GYDVEFFENEPDDVTCSICLMVLCEPMQAEECGHRFCRTCLEELRKSNNGILVCPEDRKIIN---VFRDRGKEREILNYVICCTNQEKGCNWTAPLRELQEHLEACQLLSIPCPRLMEGCQQSILRCTMDTHINEECLYRPVLCPFCTTQYLLAQESDHFQECLRYPVTCQH-CSEENPREMFEKHVSEKCTKFLHPCLY 217
            G+D +F E     + C +C   + EP+Q   CGHRFC TCL+E    + G+  CPED+  ++   ++ D   E ++L   I C + E+GC W+ PLR LQ HL  C    IPCP     C   + R  +  H+  +C  R + C FC   +       H   C +  V C++ C     R +  +H + +C K   PC Y
Sbjct:    3 GFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFL--SEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCP---NRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTY 197
The following BLAST results are available for this feature:
BLAST of TCONS_00049037-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF42.461e-2932.50TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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