TCONS_00049139-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00049139-protein
Unique Name	TCONS_00049139-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1429

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00049139-protein ID=TCONS_00049139-protein|Name=TCONS_00049139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1429bp
RFKIVPTDEYITELNEEEDEEEDEDPDMIDIGKQFYLHKSIANQLYDYQK
EGVLWFWKLYNRKQGGILGDDMGLGKTIQVISFMAGMFDAELIKNAIIVA
PLSILVNWEKEFAKWAGGIRIKPFHGTAKKQRMKNLHKIQNNDGILITTY
GMVVSNINSLCVDENGDPFEWDYLILDEGHKIKNATKTSKCVRNIPSKYH
YILTGTPVQNNLGEMWSLFDFTQQGQLLGTRKTFDTEFQKPIVRAREKDA
NEYQQQVGNKIAETLRKLIAPYFLRRTKAEVFNLNKLDDEPSTEANKENV
DHTDGKKKKQPKAPELNTRKNDLIIWVYLSKLQLKLYQGFVNSERVKECL
VTTRSPLAELNLLKKISDHPRLQSTLSKLMTSSAEQQTRRDCGLPDDQSD
ETSSSSMEEEAVDGPPVEKLIQDSGKMVFLAQLMKNLKAEKHRTIIFSQS
RKMLDIIQKTLLSMDHKLLRIDGTISNPLEREKIIQQFQSDRSFTAMLMT
TQVGSVGLTLTSADRLIIFDPSWNPGTDAQAVDRVYRVGQKKDVVIYRLI
TCGSIEEKIYRKQIFKNAVMKQATGSSNNPYRYFTNHELRELFVLDDPTQ
STTQQQLKELHQKPTNTQQGFQNHLQFLQELDCIYGVSHHDQLFSQEARN
TQTNEYEDAIKKQVNNAERRVREEFNDVDFSPRKYKPRSHDGEDTEYIKL
GRPPPSPATNRDIQNLDISMGNLKLKENESEASFTSEGSNTQSFDSRVLD
RSSLSQNQQSSYVESQSDNTSIRVESNVTSQNETGEEAANDKSVIIESPS
SGEIEVQHEKQGSLTNVPVPENMESPNDKSLVTESSSGGEMDEEQQEPTT
NHDVPVEVRDKMGSQHQGVICVDAPPCNRSNVSSHPKETEGSSYEVTDIA
CSPMPKHIQQEEASMTSERNSSCGVTSGTMDSLSDEPNSLGSFIVDDEAE
RSDSSMIQLQPKILEDLGKGYRTPPVSPVVSLLMKETNRLSRDASTPLMK
GRFLYGDDITDRMLPDKPTATPKKTVKTPKKVTETPKKQVQPLSTSFKMH
ASPGKPVSPADRPMHPRDDHHDAISIHISEESSASLYETKDTSCSPIKDL
EGSIEADSKIEQESSDGSSSGSERSENESSTDCETDSEISESEQSNNTTQ
ETATDVSHNVLEVKEKSIIQSVSESFGRGRIIPSPPMMFDSPPRDQANKI
TEDAESPKDTTANTSTNFANLSNQSETLEQTGPMNYTHVGNSPSSKRRSK
ASTFFDNSTKSDDQSAYEIKIELGESQFADTQPIDVSVYETDESFKKNSS
IHSRVSVVLENSTPQDAMDANTTEDSEASFDLDRLNRRKEQSDGIEERSV
IKDSFDENEQVDLLSQTIDNMKIKETAIQEPQQPSNDFDNEERIKLLNVK
SLLLKYMGDKNIPEKKLIKIVDLLDELNL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_031228	XLOC_031228	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00049139	TCONS_00049139	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C
IPR000330	SNF2_N
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 41..237 e-value: 2.3E-27 score: 106.9
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 57..225 score: 20.915
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 455..539 e-value: 1.5E-16 score: 71.0
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 429..539 e-value: 4.2E-17 score: 62.4
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 429..590 score: 15.2
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 58..283 e-value: 4.2E-46 score: 157.2
None	No IPR available	GENE3D	3.40.50.300		coord: 415..577 e-value: 5.8E-32 score: 109.8
None	No IPR available	GENE3D	3.40.50.10810		coord: 10..275 e-value: 2.4E-51 score: 173.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1229..1261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1009..1162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 912..940
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1177..1217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 673..713
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..315
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 380..415
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 728..853
None	No IPR available	CDD	cd00046	DEXDc	coord: 64..207 e-value: 1.47342E-23 score: 98.1783
None	No IPR available	CDD	cd00079	HELICc	coord: 423..547 e-value: 1.12996E-24 score: 101.16
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 17..276
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 169..223 coord: 416..593

Blast

[Close]

BLAST of TCONS_00049139-protein vs. Swiss-Prot (Human)
Match: ERC6L (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1)

HSP 1 Score: 617.846 bits (1592), Expect = 0.000e+0
Identity = 320/724 (44.20%), Postives = 467/724 (64.50%), Query Frame = 0

Query:    3 KIVPTDEYITELNEEEDEEEDEDPDMIDIGKQFYLHKSIANQLYDYQKEGVLWFWKLY-NRKQGGILGDDMGLGKTIQVISFMAGMFDAELIKNAIIVAPLSILVNWEKEFAKWAGGIRIKPFHGTAKKQRMKNLHKIQNNDGILITTYGMVVSNINSLCVDENGDPFEWDYLILDEGHKIK-NATKTSKCVRNIPSKYHYILTGTPVQNNLGEMWSLFDFTQQGQLLGTRKTFDTEFQKPIVRAREKDANEYQQQVGNKIAETLRKLIAPYFLRRTKAEVFNLNKLDDEPSTEANKENVDHTDGKKKKQPKAPELNTRKNDLIIWVYLSKLQLKLYQGFVNSERVKECLVTTRSPLAELNLLKKISDHPRLQSTLSKLMTSSAEQQTRRDCGLPDDQSDETSSSSMEEEAVDGPPVEKLIQDSGKMVFLAQLMKNLKAEKHRTIIFSQSRKMLDIIQKTLLSMDHKLLRIDGTISNPLEREKIIQQFQSDRSFTAMLMTTQVGSVGLTLTSADRLIIFDPSWNPGTDAQAVDRVYRVGQKKDVVIYRLITCGSIEEKIYRKQIFKNAVMKQATGSSNNPYRYFTNHELRELFVLDDPTQSTTQQQLKELHQKPTNTQQGFQNHLQFLQELDCIYGVSHHDQLFS------QEARNTQTNEYEDAIKKQVNNAERRVREEFNDVDFSPRKYKPRSHDGEDTEYI----------KLGRPPPSPA 708
            +I    E + EL E+ D   DE  D+ + G    L++ + NQL+++QKEG+ + + LY + ++GGIL DDMGLGKT+Q+I+F++GMFDA L+ + +++ P +++  W KEF KW  G+R+K FHG +K +R +NL++IQ  +G++ITTY M+++N   L     G  F WDY+ILDE HKIK ++TK++ C R IP+    +LTGTP+QNNL E+WSLFDF  QG LLGT KTF  E++ PI RAREKDA   ++ +G KI+E L  +I PYFLRRTK +V    K    P    N++N D  D       + P L +RKNDLIIW+ L  LQ ++Y+ FV+ + +KE L+ TRSPLAEL +LKK+ DHPRL S  +  +          + G    Q       S + + +D    + L+++SGKM+FL  L+K L+ E H+T++FSQSR++L+II++ L +   K LRIDGT+++ LEREK I  FQ ++ ++  L+TTQVG VGLTLT+A R++IFDPSWNP TDAQAVDRVYR+GQK++VV+YRLITCG++EEKIYR+Q+FK+++++Q TG   NP+RYF+  ELRELF ++D   S TQ QL+ LH     +      H+ +LQ L  I G+S HD +++      +E    + + Y   I+++V  A+  V  E  + +F   + + R+      E +          KL +P P P+
Sbjct:   59 RIQKIQEALEELAEQGD---DEFTDVCNSG--LLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLS-SFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDV--QKKKSSNPEARLNEKNPD-VDAI----CEMPSL-SRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACCLL---------NLGTFSAQDGNEGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLG-IAGISDHDLMYTCDLSVKEELDVVEESHY---IQQRVQKAQFLVEFESQNKEFLMEQQRTRNEGAWLREPVFPSSTKKKCPKLNKPQPQPS 755

The following BLAST results are available for this feature:

BLAST of TCONS_00049139-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00049139-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ERC6L	0.000e+0	44.20	DNA excision repair protein ERCC-6-like OS=Homo sa...	[more]

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TCONS_00049139-protein (polypeptide) - C. hemisphaerica