TCONS_00049800-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049800-protein
Unique NameTCONS_00049800-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length125

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049800-protein ID=TCONS_00049800-protein|Name=TCONS_00049800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MADLRSFLRIATLIGILSAIYTQEECQRGGCFPATGDLLVGREDRISATS
TCGLKGPEEYCIVSFLNNKKKCFRCESTREVDLTPESYKYSHLPKYMVTT
SPKDRLKGWWQAQNGEQEVQIQVIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031569XLOC_031569Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049800TCONS_00049800Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008211Laminin_N
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008211Laminin, N-terminalPFAMPF00055Laminin_Ncoord: 31..122
e-value: 8.6E-18
score: 64.7
IPR008211Laminin, N-terminalPROSITEPS51117LAMININ_NTERcoord: 27..125
score: 13.532

Blast
[Close]
BLAST of TCONS_00049800-protein vs. Swiss-Prot (Human)
Match: LAMB2 (Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.931e-28
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 0 
Query:   26 CQRGGCFPATGDLLVGREDRISATSTCGLKGPEEYCIVSFLNNKKKCFRCESTREVDLTPESYKYSHLPKYMVTTSPKDRLKGWWQAQNGEQEVQIQVIL 125
            C RG C+PATGDLLVGR DR++A+STCGL GP+ YCIVS L ++KKCF C+S R    +     +SH  + +VT+    R   WWQ++NG   V IQ+ L
Sbjct:   42 CSRGSCYPATGDLLVGRADRLTASSTCGLNGPQPYCIVSHLQDEKKCFLCDSRRP--FSARDNPHSHRIQNVVTSFAPQRRAAWWQSENGIPAVTIQLDL 139
The following BLAST results are available for this feature:
BLAST of TCONS_00049800-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAMB21.931e-2851.00Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE... [more]
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