TCONS_00050479-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00050479-protein
Unique NameTCONS_00050479-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00050479-protein ID=TCONS_00050479-protein|Name=TCONS_00050479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
TEELILEAVTLVTVEESRVPTNEDILSLVQLAENTSLLGTMLLEEAVNIS
NEVTSTSKIGKLSYQVELLVYAHYCFTITCDMEGIAGVLRTTQHCTKRLA
KRNQYSLMVRLLTGIGRFREMFYVIETLYNQHHFEVLCRKGKGDVKENQL
KMALLDFMKRYHPEDVENLNMISVGFGMYREAAEHLEKQGRKEIERIKHD
LKSGASKEVSNTLEEIRKTFSYAAENYSKEECLYLEQSCTRLAHLAKLQI
QLLPSGVQVLGLTKLQTQEFLNTHQDFVEVLF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031965XLOC_031965Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00050479TCONS_00050479Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028107Spatacsin_C_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028107Spatacsin, C-terminal domainPFAMPF14649Spatacsin_Ccoord: 37..281
e-value: 1.4E-69
score: 234.5

Blast
[Close]
BLAST of TCONS_00050479-protein vs. Swiss-Prot (Human)
Match: SPTCS (Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 4.515e-40
Identity = 96/243 (39.51%), Postives = 136/243 (55.97%), Query Frame = 0 
Query:   20 PTNED--ILSLVQLAENTSLLGTMLLEEAVNISNEVTSTSKIGKLSYQVELLVYAHYCFTITCDMEGIAGVLRTTQHCT-KRLAKRNQYSLMVRLLTGIGRFREMFYVIETLYNQHHFEVLCRKGKGDVKENQLKMALLDFMKRYHPEDVENLNMISVGFGMYREAAEHLEKQGRKEIERIKHDLKSGASKE---VSNTLEEIRKTFSYAAENYSKEECLYLEQSCTRLAHLAKLQIQLLPSG 256
            PT E    L L  L ++ +L+G  LL++  ++ +        G+LS   ELL+ AH+CFT+TC MEGI  VL+     T   LA   +Y L+VRLLTGIGR+ EM Y+ + L+ +H+FEVL RK K D     LK ALLD++KR  P D E  NMI++ F M RE  E+ E   R +++ I+      + K+   +   L +       AAE+Y+K+ C+   Q C RL  L  LQI  L +G
Sbjct: 2076 PTEESQTFLQLTTLCQDRTLVGMKLLDKISSVPH--------GELSCTTELLILAHHCFTLTCHMEGIIRVLQAAHMLTDNHLAPSEEYGLVVRLLTGIGRYNEMTYIFDLLHKKHYFEVLMRK-KLD-PSGTLKTALLDYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAARIQLKLIESQPWEDSLKDGHQLKQLLLKALTLMLDAAESYAKDSCVRQAQHCQRLTKLITLQIHFLNTG 2308
The following BLAST results are available for this feature:
BLAST of TCONS_00050479-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPTCS4.515e-4039.51Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3[more]
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