TCONS_00051106-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051106-protein
Unique NameTCONS_00051106-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length111

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051106-protein ID=TCONS_00051106-protein|Name=TCONS_00051106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MAQKLTTDAFSSFWKLCKRLSNESSYKLKTSLIKEYITKKSDNSGKYQGN
LYLLAKFLLPGKEKRIYNVKDKQLLKYFSQIFKTDLKSMTEHLEKQGVVS
DTVMDFFSKSH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032398XLOC_032398Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051106TCONS_00051106Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012308DNA_ligase_ATP-dep_N
Vocabulary: Molecular Function
TermDefinition
GO:0003910DNA ligase (ATP) activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0006281DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
molecular_function GO:0003677 DNA binding
molecular_function GO:0003910 DNA ligase (ATP) activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012308DNA ligase, ATP-dependent, N-terminalGENE3D1.10.3260.10coord: 2..111
e-value: 8.4E-17
score: 61.0
IPR012308DNA ligase, ATP-dependent, N-terminalPFAMPF04675DNA_ligase_A_Ncoord: 10..110
e-value: 1.5E-12
score: 48.1

Blast
[Close]
BLAST of TCONS_00051106-protein vs. Swiss-Prot (Human)
Match: DNLI3 (DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 9.406e-20
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 0 
Query:   13 FWKLCKRLSNESSYKLKTSLIKEYITKKSDNSGKYQGNLYLLAKFLLPGKEKRIYNVKDKQLLKYFSQIFKTDLKSMTEHLEKQGVVSDTVMDFFSKS 110
            F KLC  +++  SY  KT +I++++ K S   G + G++YL  K LLPG  K +YN+ DKQ++K FS+IF  +   M   LE QG VS+T+  FF +S
Sbjct:  266 FRKLCAMVADNPSYNTKTQIIQDFLRKGSAGDG-FHGDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNPDDMARDLE-QGDVSETIRVFFEQS 361
The following BLAST results are available for this feature:
BLAST of TCONS_00051106-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNLI39.406e-2042.86DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2[more]
back to top