TCONS_00051308-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051308-protein
Unique NameTCONS_00051308-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length157

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051308-protein ID=TCONS_00051308-protein|Name=TCONS_00051308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MADERIELHFIILSQDAGGIIGREGRNIRQMRDESGANINITAGTGVERI
LNIKGNSEQVKSAVQMTAEKLQEIASNGNSDSVPPVTMRLLVPNSQCGPL
IGKGGQRIKEIREASGATITIPSETLPGSSERSVTLAGSPQSLGTCVSKI
YEVFEEV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032515XLOC_032515Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051308TCONS_00051308Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 84..155
e-value: 6.0E-14
score: 62.3
coord: 4..72
e-value: 2.6E-10
score: 50.3
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 82..157
e-value: 2.1E-22
score: 78.1
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 2..81
e-value: 1.6E-15
score: 56.1
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 87..151
e-value: 4.5E-16
score: 58.3
coord: 12..66
e-value: 2.6E-12
score: 46.3
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 6..75
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 79..156
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 85..150
score: 17.359
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 5..67
score: 14.592
NoneNo IPR availableCDDcd00105KH-Icoord: 7..66
e-value: 7.35059E-9
score: 47.5547
NoneNo IPR availableCDDcd02396PCBP_like_KHcoord: 87..150
e-value: 2.39924E-19
score: 76.3611

Blast
[Close]
BLAST of TCONS_00051308-protein vs. Swiss-Prot (Human)
Match: PCBP2 (Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.303e-39
Identity = 69/155 (44.52%), Postives = 104/155 (67.10%), Query Frame = 0 
Query:    6 IELHFIILSQDAGGIIGREGRNIRQMRDESGANINITAGTGVERILNIKGNSEQVKSAVQMTAEKLQEIAS----NGNSDSVPPVTMRLLVPNSQCGPLIGKGGQRIKEIREASGATITIPSETLPGSSERSVTLAGSPQSLGTCVSKIYEVFEE 156
            + +  ++  ++ G IIG++G ++++MR+ESGA INI+ G   ERI+ + G +  +  A  M  +KL+E  S    N  + S PPVT+RL+VP SQCG LIGKGG +IKEIRE++GA + +  + LP S+ER++T+AG PQS+  CV +I  V  E
Sbjct:   14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 168
The following BLAST results are available for this feature:
BLAST of TCONS_00051308-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCBP29.303e-3944.52Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP... [more]
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