TCONS_00051404-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00051404-protein
Unique NameTCONS_00051404-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00051404-protein ID=TCONS_00051404-protein|Name=TCONS_00051404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp
MSEQTGQYDLDTSGGIMEEIQALIAPPQSEESKRRQAAREAALNRRTIRT
VNRDSCDACKEGGDLLCCDTCPTSLHLQCCDPPLEEEDVLTGDWVCVECK
NGVTKRPEFKRSVSCSMSEKSVGSSRSSSPIDSELGLNPFEQLTAMFRHK
NPREFQLPAQMQQFAVMPGDRKRRTPVQAKKKEDEAQRLCFICSKTSRIG
DLIYCDFCPCVYHRDCLMPPLAQEPIGLWMCPNHPENFHPGIRTPKYSQR
VQVVEEMRSNINHNTIKLQFFNRAKKERILMNREEHQPKKRRTCNVPDIV
KAQYENPPAEMVPDQYGYHVNQPLEPHMRPITLPTTDEKEQWLKSVVDLQ
CAIAGSLETSQRTPSSSSTTPSLTTSSKGPSSASVTSTSGGGTTGTNASE
AMDIDKEQTTTERQLKTEQTTKKVDSSSSPSSSEVTSSSSSTVANKSSDR
KSDTGQQQQSAPSTTSITTIKEEAQPSAITGIIYSNVFHLLIFEGTRIAY
RGESKNRH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_032575XLOC_032575Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00051404TCONS_00051404Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 55..100
e-value: 3.3E-9
score: 46.6
coord: 189..235
e-value: 7.5E-9
score: 45.4
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 56..101
e-value: 2.9E-10
score: 39.8
coord: 190..232
e-value: 2.6E-7
score: 30.3
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 53..102
score: 9.419
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 187..237
score: 8.573
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 167..252
e-value: 1.6E-12
score: 46.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 50..114
e-value: 6.9E-13
score: 47.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 358..469
NoneNo IPR availableCDDcd15534PHD2_PHF12_Rco1coord: 189..234
e-value: 1.84655E-15
score: 70.0679
NoneNo IPR availableCDDcd15533PHD1_PHF12coord: 55..99
e-value: 9.43376E-22
score: 87.4119
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 56..99
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 48..107
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 179..245

Blast
[Close]
BLAST of TCONS_00051404-protein vs. Swiss-Prot (Human)
Match: PHF12 (PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.197e-39
Identity = 88/244 (36.07%), Postives = 124/244 (50.82%), Query Frame = 0 
Query:  139 PFEQLTAMFRHKNPREFQLPAQMQQFAVMPGDRKRR-----TPVQAKKKEDEAQ---------RLCFICSKTSRIGDLIYCDFCPCVYHRDCLMPPLAQEPIGLWMCPNHPENFHPGIRTPKYSQRVQVVEEMRSNINHNTIKLQFFNRAKKERILMNREEHQPKKRRTCNVPDIVKAQYENPPAEMVP----DQYGYHVNQPLEPHMRPIT---LPTTDEKEQWLKSVVDLQCAIAGSLETSQ 361
            PFE L A    +NP +FQLP ++     +PG  KRR     T    KK + E           ++CF C+++ R+  LI CD+CP ++H DCL PPL   P+G WMCPNH E+     +    S R QV +  +  ++ + +K+ F NR  K+    NR   Q  KRR+  VPD +K+QY+ PP  + P    D        P E  M  +    L T  E+++WL SVV LQC+I   L   Q
Sbjct:  209 PFELLIAAAMERNPTQFQLPNELTCTTALPGSSKRRRKEETTGKNVKKTQHELDHNGLVPLPVKVCFTCNRSCRVAPLIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVVLNQKNMTLSNRCQVFDRFQDTVSQHVVKVDFLNRIHKKHP-PNRRVLQSVKRRSLKVPDAIKSQYQFPPPLIAPAAIRDGELICNGIPEESQMHLLNSEHLATQAEQQEWLCSVVALQCSILKHLSAKQ 451

HSP 2 Score: 130.183 bits (326), Expect = 7.266e-32
Identity = 60/110 (54.55%), Postives = 78/110 (70.91%), Query Frame = 0 
Query:    1 MSEQTGQYDLDTSGGIMEEIQALIAPPQSEESKRRQAAREAALNRRTIRTVNRDSCDACKEGGDLLCCDTCPTSLHLQCCDPPLEEEDVLTGDWVCVECKNGVTKRPEFK 110
            M  +T  YDLDTSGG+ME+IQAL+APP+++E+++R    E    RR+ R  N DSCD+CKEGGDLLCCD CP + HLQCC+PPL EE +  G+W+C  C     KR + K
Sbjct:    5 METKTIVYDLDTSGGLMEQIQALLAPPKTDEAEKRSRKPEKE-PRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQKK 113
The following BLAST results are available for this feature:
BLAST of TCONS_00051404-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHF122.197e-3936.07PHD finger protein 12 OS=Homo sapiens GN=PHF12 PE=... [more]
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