TCONS_00052517-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052517-protein
Unique NameTCONS_00052517-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052517-protein ID=TCONS_00052517-protein|Name=TCONS_00052517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
XSKSGFTSQSHQLQNNDSVFNGSGNTTLFNIENNRHALELCQQMSNTLMG
IRHKICKAIDKEKNRSNTWLGYFREIFMMNEVDDFSCKRDENRLIDYLEH
SCKAFANFFKLPELPTRGESESLSDQVENINSLIPTPRLYDDESVPEHRV
TENGIELTDRGRYQMIQGMRRFDVVYGGDREFQPLRSFESPHLVRLLYRI
STHLNNKHGERLHELYNRPDIIGRSLRKISQKGLKQEHYAESAIKMPTTS
RSQTTTAAADVDNQVKPRITLRFMGSFYFLGYLCWAVVLCRLFDCNWLTI
ILLTLLVLMVSVLYHVDSPPKSKRN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033207XLOC_033207Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052517TCONS_00052517Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024129Sphingomy_SMPD4
Vocabulary: Molecular Function
TermDefinition
GO:0050290sphingomyelin phosphodiesterase D activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0050290 sphingomyelin phosphodiesterase D activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024129Sphingomyelin phosphodiesterase 4PFAMPF14724mit_SMPDasecoord: 27..272
e-value: 1.3E-26
score: 92.8

Blast
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BLAST of TCONS_00052517-protein vs. Swiss-Prot (Human)
Match: NSMA3 (Sphingomyelin phosphodiesterase 4 OS=Homo sapiens GN=SMPD4 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 5.199e-22
Identity = 87/307 (28.34%), Postives = 142/307 (46.25%), Query Frame = 0 
Query:    2 SKSGFTSQSH--QLQNNDSVFNGSGNTTLFNIENNRHALELCQQMSNTLMGIRHKICKAIDKEKNRSN------TWLGY----FREIFMMNEVDDFSCKRDENRLID-YLEHSCKAFANFFKLPELPTRGESESL-SDQVENINSLIPTPRLYDDESVPEHRVTENGIELTDRGRYQMIQGMRRFDVVYGGDREFQPLRSFESPHLVRLLYRISTHLNNKHGERLHELYNRPDIIGRSLR-KISQKGLKQEHYAESAIKMPTTSRSQTTTAAADVDNQVKPRITLRFMGSFYFLGYLCWAVVLCRLF 293
            + + F  +SH   L+  D  +     T +F  E     L L Q ++      +H   K+I  +   S       +WLG+        +  N++D+    +D  R  D YLE + +     F+L E   R  + +L + Q EN             + +P+  V E+G+ LT  GRYQ+I G+RRF++ Y GD E QP+RS+E   LVR L+R+S+ +N++   ++  L +R D +G   R  +++ GL   H       +    R Q         +   PR++LRF+GS+  L  L  A  +  LF
Sbjct:  522 TDASFKVKSHVYSLEGQDCKY-----TPMFGPEARTLVLRLAQLITQA----KHT-AKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMG--QDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDEN-----------GKKQLPDCIVGEDGLILTPLGRYQIINGLRRFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALCSRDDFLGSFCRYHLTEPGLASRHL------LSPVGRRQVA------GHTRGPRLSLRFLGSYRTLVSLLLAFFVASLF 793
The following BLAST results are available for this feature:
BLAST of TCONS_00052517-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSMA35.199e-2228.34Sphingomyelin phosphodiesterase 4 OS=Homo sapiens ... [more]
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