TCONS_00052517-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00052517-protein
Unique Name	TCONS_00052517-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	325

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00052517-protein ID=TCONS_00052517-protein|Name=TCONS_00052517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
XSKSGFTSQSHQLQNNDSVFNGSGNTTLFNIENNRHALELCQQMSNTLMG
IRHKICKAIDKEKNRSNTWLGYFREIFMMNEVDDFSCKRDENRLIDYLEH
SCKAFANFFKLPELPTRGESESLSDQVENINSLIPTPRLYDDESVPEHRV
TENGIELTDRGRYQMIQGMRRFDVVYGGDREFQPLRSFESPHLVRLLYRI
STHLNNKHGERLHELYNRPDIIGRSLRKISQKGLKQEHYAESAIKMPTTS
RSQTTTAAADVDNQVKPRITLRFMGSFYFLGYLCWAVVLCRLFDCNWLTI
ILLTLLVLMVSVLYHVDSPPKSKRN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033207	XLOC_033207	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00052517	TCONS_00052517	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024129	Sphingomy_SMPD4

Vocabulary: **Molecular Function**
Term	Definition
GO:0050290	sphingomyelin phosphodiesterase D activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0050290	sphingomyelin phosphodiesterase D activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024129	Sphingomyelin phosphodiesterase 4	PFAM	PF14724	mit_SMPDase	coord: 27..272 e-value: 1.3E-26 score: 92.8

Blast

[Close]

BLAST of TCONS_00052517-protein vs. Swiss-Prot (Human)
Match: NSMA3 (Sphingomyelin phosphodiesterase 4 OS=Homo sapiens GN=SMPD4 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 5.199e-22
Identity = 87/307 (28.34%), Postives = 142/307 (46.25%), Query Frame = 0

Query:    2 SKSGFTSQSH--QLQNNDSVFNGSGNTTLFNIENNRHALELCQQMSNTLMGIRHKICKAIDKEKNRSN------TWLGY----FREIFMMNEVDDFSCKRDENRLID-YLEHSCKAFANFFKLPELPTRGESESL-SDQVENINSLIPTPRLYDDESVPEHRVTENGIELTDRGRYQMIQGMRRFDVVYGGDREFQPLRSFESPHLVRLLYRISTHLNNKHGERLHELYNRPDIIGRSLR-KISQKGLKQEHYAESAIKMPTTSRSQTTTAAADVDNQVKPRITLRFMGSFYFLGYLCWAVVLCRLF 293
            + + F  +SH   L+  D  +     T +F  E     L L Q ++      +H   K+I  +   S       +WLG+        +  N++D+    +D  R  D YLE + +     F+L E   R  + +L + Q EN             + +P+  V E+G+ LT  GRYQ+I G+RRF++ Y GD E QP+RS+E   LVR L+R+S+ +N++   ++  L +R D +G   R  +++ GL   H       +    R Q         +   PR++LRF+GS+  L  L  A  +  LF
Sbjct:  522 TDASFKVKSHVYSLEGQDCKY-----TPMFGPEARTLVLRLAQLITQA----KHT-AKSISDQCAESPAGHSFLSWLGFSSMDTNGSYTANDLDEMG--QDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDEN-----------GKKQLPDCIVGEDGLILTPLGRYQIINGLRRFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAINHRFAGQMAALCSRDDFLGSFCRYHLTEPGLASRHL------LSPVGRRQVA------GHTRGPRLSLRFLGSYRTLVSLLLAFFVASLF 793

The following BLAST results are available for this feature:

BLAST of TCONS_00052517-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00052517-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NSMA3	5.199e-22	28.34	Sphingomyelin phosphodiesterase 4 OS=Homo sapiens ...	[more]

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TCONS_00052517-protein (polypeptide) - C. hemisphaerica