TCONS_00052678-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00052678-protein
Unique NameTCONS_00052678-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00052678-protein ID=TCONS_00052678-protein|Name=TCONS_00052678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
LITQHNIAQCLQDTGKTKEALEIYRRVEQKQLKILGTDHPRVLITQHNIA
QCLQDTGKTKEALEIYRRVEQKQLKILGTDHPRVLITQHNIAQCLQDTGK
TKEALEIYRRVEQKQLKILGTDHPSVLITQKNIADSLVDIEKKEEAVVIY
KQVASKQLNVLGEQHPDLLITKYNLAVCLHKIGRIEEALDIFREVEQVRM
TTLDENHPSLVRTKKFIEMCLEDLKSSNKSVLKRRCVIA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033283XLOC_033283Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00052678TCONS_00052678Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 85..118
e-value: 68.0
score: 7.7
coord: 43..76
e-value: 68.0
score: 7.7
coord: 1..34
e-value: 68.0
score: 7.7
coord: 169..202
e-value: 26.0
score: 11.4
coord: 127..160
e-value: 480.0
score: 0.2
NoneNo IPR availablePFAMPF13424TPR_12coord: 2..69
e-value: 8.5E-15
score: 54.7
NoneNo IPR availablePFAMPF13374TPR_10coord: 173..208
e-value: 0.0039
score: 16.9
coord: 85..124
e-value: 1.3E-6
score: 28.0
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 26..69
e-value: 5.2E-17
score: 61.4
coord: 70..141
e-value: 7.8E-21
score: 73.7
coord: 142..234
e-value: 4.5E-18
score: 64.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 2..25
e-value: 0.27
score: 10.7
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 5..198

Blast
[Close]
BLAST of TCONS_00052678-protein vs. Swiss-Prot (Human)
Match: KLC1 (Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 9.212e-18
Identity = 64/213 (30.05%), Postives = 100/213 (46.95%), Query Frame = 0 
Query:    1 LITQHNIAQCLQDTGKTKEALEIYRRVEQKQLKILGTDHPRVLITQHNIAQCLQDTGKTKEALEIYRRVEQKQLKILGTDHPRVLITQHNIAQCLQDTGKTKEALEIYRRVEQKQLKILGTDHPSVLITQKNIADSLVDIEKKEEAVVIYKQVASKQLNVLGEQHPDLLITKYNLAVCLHKIGRIEEALDIFREV-----EQVRMTTLDENHP 208
            L T HN+       G+ + A+ + ++  +   K  G DHP V    + +A   +D  K K+A  +       + K LG DHP V  T +N+A      GK KEA  + +R  + + K+LG DHP V     N+A    +  K EE    Y++        LG   P++  TK NLA C  K G+ ++A  +++E+     E+   +  DEN P
Sbjct:  213 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 425
The following BLAST results are available for this feature:
BLAST of TCONS_00052678-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLC19.212e-1830.05Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1... [more]
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