TCONS_00053029-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053029-protein
Unique Name	TCONS_00053029-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	563

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053029-protein ID=TCONS_00053029-protein|Name=TCONS_00053029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=563bp
MRMLVNNYLLVILMLAPIPYVLLKETPKECGIVLLQKENDSHCLKERRRN
LLFQKQFFQITKPEDHTIYETNANSIGFHKILPTVPWLNRSKEEMVAYYS
FNDEDSRYMGMFAAYINFLKTVEKKVRDTFFIALRNTTDVPSFQFYERIN
RAFDGSVKKLNTLYVSNPCHNKECLKETSQQYNPLDDEMFVQRRLAGPCP
FNLKQVSTNGPTGILLSTLKRKMNLDFDYDQALTRALGKRTTLAKAVNNG
LVFVLYHPEIDHITASSPFSDPAQERTFRKMNNPIVFFILTDDGFLKIVS
IQRDSEKDSEVLQPIESDPEEWLKVKGDAEMADSNYCQGFYHSGKIHLVS
TIYCLAYRRHIDKNHPLYDFFLYHCEGTVPHISLVYHTLLTSNERSDASL
GMGHQGFLQLGTKAFNSRMYGELDLPFFLKRKGLDNKRIKYYPFRDDAEV
LWEELAGFTNDVISEIYKTDDEVSQDPSLQSFATELSSKDAGNMAGFPTY
FESKQSIRLFLLRFLWFNVIHTSLNYPLNMHSQTFSPTKSYQNIQREPFS
TYLQTLPDLYTAV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033492	XLOC_033492	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053029	TCONS_00053029	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013819	LipOase_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.60		coord: 215..333 e-value: 4.5E-7 score: 29.6
None	No IPR available	GENE3D	1.20.245.10		coord: 334..563 e-value: 2.1E-34 score: 118.7
IPR013819	Lipoxygenase, C-terminal	PFAM	PF00305	Lipoxygenase	coord: 185..526 e-value: 8.7E-16 score: 57.4
IPR013819	Lipoxygenase, C-terminal	PROSITE	PS51393	LIPOXYGENASE_3	coord: 116..563 score: 35.513
IPR013819	Lipoxygenase, C-terminal	SUPERFAMILY	48484	Lipoxigenase	coord: 97..562

Blast

[Close]

BLAST of TCONS_00053029-protein vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.597e-20
Identity = 72/296 (24.32%), Postives = 136/296 (45.95%), Query Frame = 0

Query:  236 ALGKRTTLAKAVNNGLVFVLYHPEIDHITASSPFSDPAQERTFRKMNNPIVFFILTDDGFLKIVSIQRDSEKDSEVLQPIESDPE-EWLKVKGDAEMADSNYCQGFYHSGKIHLVSTIYCLAYRRHIDKNHPLYDFFLYHCEGTVPHISLVYHTLLTSNERSDASLGMGHQGFLQLGTKAFNSRMYGELDLPFFLKRKGLDNKR-IKYYPFRDDAEVLWEELAGFTNDVISEIYKTDDEVSQDPSLQSFATE--LSSKDAGNMAGFPTYFESKQSIRLFLLRFLW-FNVIHTSLNY 526
            +L ++ +L + V  G +F++    +D I A+   +DP    T + +  PI          +  ++IQ +     E    + SD + +WL  K     +D +  Q   H  + HLVS ++ +A  R +   HP++   + H   T+   +     L+      D +   G  G +Q+  +A     Y  L  P  +K +G+++K  I YY +RDD  ++WE +  FT +V+   Y+ D  V +DP LQ F  +  +        +GFP   +S++ +  +L   ++  +  H ++N+
Sbjct:  266 SLERQLSLEQEVQQGNIFIVDFELLDGIDANK--TDPC---TLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNF 556

The following BLAST results are available for this feature:

BLAST of TCONS_00053029-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053029-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LOX5	1.597e-20	24.32	Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO...	[more]

You are here

TCONS_00053029-protein (polypeptide) - C. hemisphaerica