TCONS_00053444-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053444-protein
Unique NameTCONS_00053444-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053444-protein ID=TCONS_00053444-protein|Name=TCONS_00053444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
PFRYCKINIIIMSLWIDKHRPGTLAKLTYHLDQAQYLKRLVNSGDFPHLL
VYGPSGAGKKTRIMCLLRELYGTAVEKLKLEQQTFETPSKKKVEISTIGS
NYHIEVNPSDAGIYDRLVIQELIKTTASTHQFDPNSQKSFKVVLLMETDR
LTKDAQHALRRTMEKYVTTCRLILCCNSTSKVIPAIRSRCLGIRVAAPSK
EEITQCLYTVCKKESLSLPEGLAQRIAQKCKGNLRRALLMCEACRVQQYP
FTADQSIQDADWEIFLKQTASSIIEQQTPKRLLEVRTRFYELLTHCIPAD
VIMKGLLGELLKNCDGTLKSEVIQLAAHYEHRLQLGTKPIYHLEAFVAKF
MSIYKRFLEEGMADMF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033740XLOC_033740Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053444TCONS_00053444Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR008921DNA_pol3_clamp-load_cplx_C
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 12..198
e-value: 2.4E-25
score: 88.7
NoneNo IPR availableGENE3D1.20.272.10coord: 261..355
e-value: 6.0E-36
score: 122.2
NoneNo IPR availablePFAMPF13177DNA_pol3_delta2coord: 34..195
e-value: 5.7E-10
score: 39.1
NoneNo IPR availableGENE3D1.10.8.60coord: 199..260
e-value: 3.5E-14
score: 51.6
NoneNo IPR availableCDDcd00009AAAcoord: 37..199
e-value: 1.09602E-9
score: 54.4595
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 35..246
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 260..355

Blast
[Close]
BLAST of TCONS_00053444-protein vs. Swiss-Prot (Human)
Match: RFC3 (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2)

HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 253/355 (71.27%), Postives = 299/355 (84.23%), Query Frame = 0 
Query:   12 MSLWIDKHRPGTLAKLTYHLDQAQYLKRLVNSGDFPHLLVYGPSGAGKKTRIMCLLRELYGTAVEKLKLEQQTFETPSKKKVEISTIGSNYHIEVNPSDAGIYDRLVIQELIKTTASTHQFDPNSQKSFKVVLLMETDRLTKDAQHALRRTMEKYVTTCRLILCCNSTSKVIPAIRSRCLGIRVAAPSKEEITQCLYTVCKKESLSLPEGLAQRIAQKCKGNLRRALLMCEACRVQQYPFTADQSIQDADWEIFLKQTASSIIEQQTPKRLLEVRTRFYELLTHCIPADVIMKGLLGELLKNCDGTLKSEVIQLAAHYEHRLQLGTKPIYHLEAFVAKFMSIYKRFLEEGMADMF 366
            MSLW+DK+RP +L +L YH +QA  L+ LV  GDFPHLLVYGPSGAGKKTRIMC+LRELYG  VEKL++E QT  TPSKKK+EISTI SNYH+EVNPSDAG  DR+VIQE++KT A + Q + NSQ+ FKVVLL E D+LTKDAQHALRRTMEKY++TCRLILCCNSTSKVIP IRSRCL +RV APS E+I   L TVCKKE L+LP  LA R+A+K   NLR+ALLMCEACRVQQYPFTADQ I + DWE++L++TA++I+ QQTP+RLLEVR R YELLTHCIP ++IMKGLL ELL NCDG LK EV Q+AA+YEHRLQLG+K IYHLEAFVAKFM++YK+F+E+G+  M 
Sbjct:    1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355
The following BLAST results are available for this feature:
BLAST of TCONS_00053444-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFC30.000e+071.27Replication factor C subunit 3 OS=Homo sapiens GN=... [more]
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