TCONS_00053576-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053576-protein
Unique NameTCONS_00053576-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053576-protein ID=TCONS_00053576-protein|Name=TCONS_00053576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp
MAAVNSVEIPLRDTDEVIELDFDQLPDGDEVLSILEQENAVLHIWLTVGQ
QYFKQNKHEDFVKIFEAACADNFASANLEYKEYAQDQMIVLDSLAAYYVQ
QGRKERNKDQKRELFTKATQLYTTADKIIMLDQSHLLGRAYFCLLEGDKM
DQADAQFNFVLAQSTNNIPALLGKACISFQKRDYKSSLAYYKKALRTNPN
CPAEVRLGMGHCFVRLGRWEKARLAFERTLELNSQCTGALVGLAILELNS
KKADSIKNGVQLLSKAYTIDNQSPMVLNHLANHFFFKKDYTKVQHLALHA
FHGTEVEAMQAESCYQLARSFHVQGDYDQAFQYYYQATQFASQNFVLPWF
GLGQMYIARGDNINAAQCFEKVLKHQPNNYETMKILGSLYSTSSEPEKKE
TAKNHLKKVTEQFPDDVEAWIELAGILEQTDVQAALSAYGAASKILKEKV
ETDVPPEILNNVGALHFRLGNINEAKKFYEAALDHCKEESMQDENYYNAI
AVSMYYNTARLMEAQFEFDKAEKIYKDILREHPSYVDCYLRLGCMGRDKG
QIYEASDWFKMALQIDQDHPDAWTLIGNLHLAKQEWGPGQKKFERILKQP
ATANDTYALAALGNVWLQTLHTPSRDKTKEKRHQERAISMXVPGTYFF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033811XLOC_033811Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053576TCONS_00053576Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013105TPR_2
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 456..489
e-value: 0.0012
score: 28.1
coord: 570..603
e-value: 310.0
score: 1.8
coord: 311..344
e-value: 2.8E-4
score: 30.2
coord: 346..379
e-value: 0.0017
score: 27.6
coord: 502..535
e-value: 38.0
score: 9.8
coord: 203..236
e-value: 0.0017
score: 27.6
coord: 168..201
e-value: 0.0027
score: 26.9
coord: 536..569
e-value: 0.88
score: 18.6
IPR019734Tetratricopeptide repeatPFAMPF13174TPR_6coord: 505..534
e-value: 0.2
score: 12.3
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 311..343
e-value: 0.0069
score: 16.4
coord: 349..379
e-value: 0.019
score: 15.0
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 203..236
score: 9.381
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 570..603
score: 5.605
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 502..535
score: 7.641
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 168..201
score: 7.759
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 311..344
score: 8.88
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 346..379
score: 10.709
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 42..75
score: 5.428
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 536..569
score: 7.877
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 456..489
score: 8.644
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 17..134
e-value: 2.8E-4
score: 19.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 471..500
e-value: 5.2E-4
score: 19.6
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 323..353
e-value: 1.6E-5
score: 24.3
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 187..255
e-value: 1.5E-14
score: 53.3
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 354..406
e-value: 4.0E-9
score: 35.9
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 407..470
e-value: 2.5E-8
score: 33.4
coord: 256..322
e-value: 2.2E-5
score: 23.9
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 571..639
e-value: 9.2E-4
score: 18.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 501..570
e-value: 3.0E-15
score: 55.4
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 135..186
e-value: 8.2E-6
score: 25.2
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 456..602
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 134..287
coord: 325..485
IPR013105Tetratricopeptide repeat 2PFAMPF07719TPR_2coord: 456..486
e-value: 5.1E-5
score: 23.0
NoneNo IPR availablePFAMPF13432TPR_16coord: 174..231
e-value: 9.2E-4
score: 19.7
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 134..603
score: 42.003

Blast
[Close]
BLAST of TCONS_00053576-protein vs. Swiss-Prot (Human)
Match: CTR9 (RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1)

HSP 1 Score: 1024.23 bits (2647), Expect = 0.000e+0
Identity = 486/635 (76.54%), Postives = 558/635 (87.87%), Query Frame = 0 
Query:    6 SVEIPLRDTDEVIELDFDQLPDGDEVLSILEQENAVLHIWLTVGQQYFKQNKHEDFVKIFEAACADNFASANLEYKEYAQDQMIVLDSLAAYYVQQGRKERNKDQKRELFTKATQLYTTADKIIMLDQSHLLGRAYFCLLEGDKMDQADAQFNFVLAQSTNNIPALLGKACISFQKRDYKSSLAYYKKALRTNPNCPAEVRLGMGHCFVRLGRWEKARLAFERTLELNSQCTGALVGLAILELNSKKADSIKNGVQLLSKAYTIDNQSPMVLNHLANHFFFKKDYTKVQHLALHAFHGTEVEAMQAESCYQLARSFHVQGDYDQAFQYYYQATQFASQNFVLPWFGLGQMYIARGDNINAAQCFEKVLKHQPNNYETMKILGSLYSTSSEPEKKETAKNHLKKVTEQFPDDVEAWIELAGILEQTDVQAALSAYGAASKILKEKVETDVPPEILNNVGALHFRLGNINEAKKFYEAALDHCKEESMQDENYYNAIAVSMYYNTARLMEAQFEFDKAEKIYKDILREHPSYVDCYLRLGCMGRDKGQIYEASDWFKMALQIDQDHPDAWTLIGNLHLAKQEWGPGQKKFERILKQPATANDTYALAALGNVWLQTLHTPSRDKTKEKRHQERAISM 640
            S+EIPLRDTDEVIELDFDQLP+GDEV+SIL+QE+  LHIW+ +  +Y+KQ K E+FVK+ EAA  D     NL+Y+++ +DQM  LD+LAAYYVQQ RKE+NKD K++L T+AT LYT ADKIIM DQ+HLLGRA FCLLEGDKMDQADAQF+FVL QS NNIPALLGKACISF K+DY+ +LAYYKKALRTNP CPAEVRLGMGHCFV+L + EKARLAF R LELNS+C GALVGLA+LELN+K+ADSIKNGVQLLS+AYTID  +PMVLNHLANHFFFKKDY+KVQHLALHAFH TEVEAMQAESCYQLARSFHVQ DYDQAFQYYYQATQFAS +FVLP+FGLGQMYI RGD  NA+QCFEKVLK  PNNYETMKILGSLY+ S + EK++ AK HLKKVTEQ+PDDVEAWIELA ILEQTD+Q ALSAYG A++IL+EKV+ DVPPEILNNVGALHFRLGN+ EAKK++ A+LD  K E+  DE+YYNAI+V+  YN ARL EA  EF +AEK+YK+ILREHP+YVDCYLRLG M RDKG  YEASDWFK ALQI+QDHPDAW+LIGNLHLAKQEWGPGQKKFERILKQP+T +DTY++ ALGNVWLQTLH P+RD+ KEKRHQ+RA+++
Sbjct:    5 SIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEEFVKLLEAARID----GNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMADKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYRGALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAVLELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTEVEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENASQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDRAKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQSDTYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAI 635
The following BLAST results are available for this feature:
BLAST of TCONS_00053576-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTR90.000e+076.54RNA polymerase-associated protein CTR9 homolog OS=... [more]
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