putative Pdx/Xlox homeodomain transcription factor (polypeptide) - C. hemisphaerica

Overview
Nameputative Pdx/Xlox homeodomain transcription factor
Unique NameTCONS_00053612-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053612-protein ID=TCONS_00053612-protein|Name=putative Pdx/Xlox homeodomain transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MSNNSNFNSNAVTATNLQSISSQQQQQQQRSYWQQHRQRLSHPPILETNT
YSASSPSFNSIYPITTCRYEYTTNFVPAIPQSLTALASSTPPSGLGHSVS
YLNTPASSDPLDYNNTLQNNLTSSGSVINSQNTKFLSCQYSGSTLQGKQM
ESEDLHLTSGGVYQNASQSRDINNSPSSSSTISHYSYNDTNNNTQTRIKD
TDKNTDTQGQSSSSTTQKNKMPPLDMKEVIETLATLKNNGQIKKADGEDS
DKNKNKEKPKDEKPPKSWQSAKVRKRSRTTYTRAQQLELEKEYRYNRYIS
RARRIELAKNLTLTEKHIKIWYQNRRMKEKRDEEDIMRGTTVLDPRSSYY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033828XLOC_033828Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053612TCONS_00053612Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 296..307
score: 47.33
coord: 311..321
score: 55.0
coord: 321..330
score: 70.72
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 274..336
e-value: 4.5E-20
score: 82.7
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 275..331
e-value: 3.2E-18
score: 65.2
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 272..332
score: 19.953
NoneNo IPR availableGENE3D1.10.10.60coord: 190..335
e-value: 3.0E-20
score: 71.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..280
NoneNo IPR availableCDDcd00086homeodomaincoord: 275..333
e-value: 8.04563E-18
score: 75.3576
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 307..330
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 267..333

Blast
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BLAST of putative Pdx/Xlox homeodomain transcription factor vs. Swiss-Prot (Human)
Match: HXB7 (Homeobox protein Hox-B7 OS=Homo sapiens GN=HOXB7 PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 2.688e-23
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0 
Query:  274 RKRSRTTYTRAQQLELEKEYRYNRYISRARRIELAKNLTLTEKHIKIWYQNRRMKEKRDEEDIMRGTTVLD 344
            RKR R TYTR Q LELEKE+ YNRY++R RRIE+A  L LTE+ IKIW+QNRRMK K++ +    GTT  D
Sbjct:  137 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQD 207
The following BLAST results are available for this feature:
BLAST of putative Pdx/Xlox homeodomain transcription factor vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HXB72.688e-2361.97Homeobox protein Hox-B7 OS=Homo sapiens GN=HOXB7 P... [more]
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