TCONS_00053673-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053673-protein
Unique NameTCONS_00053673-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053673-protein ID=TCONS_00053673-protein|Name=TCONS_00053673-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp
MADLNVAGLISIIIFYLAILGIGLFAAWRKNKHTKENAQTTQDETNEVIL
AGRTIGMFIGCFTMTATWVGGGYINGTAESVYNDGLVWAQAPWGYATSLA
MGGFFFARKMREAEYITMLDPLQDKYGRVMGAFLYIPAFLGETFWSASIL
AALGATLTVILGLNMNISVIVSACIAVGYTFFGGLYSVAYTDVVQLICIA
VGLWLTVPFSLTNENVESIGARKEEWLGQLYGAKVGKWIDYAFLLICGGI
PWQVYFQRVLSSKSAHRAQILSFVAAFGCIVLAIPAVLIGAAAKSADWGA
VSGAVDANLVTNKTGEWVITDTRLVLPMVLQYLAPGWVSFIGLGAISAAV
MSSADSSVLSASSMFGHNIYKLIIRKNASANEIIWVIRIGIIFVGIMATL
VGLTVDSIYALFHLCSDLVFVILFPQLVGAVHIQDVNTYGSICAYIVGLF
LRITGGEELIGFPATFKYPYYDETYSNGKGSQNFPFRTLAMIISFITLVS
VSKLAYYLFDNEILGENYDFLGVLERRRNLAGKKGRRGEDDALPLQEKYN
GFDDPTPQQI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033853XLOC_033853Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053673TCONS_00053673Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001734Na/solute_symporter
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001734Sodium/solute symporterPFAMPF00474SSFcoord: 49..448
e-value: 1.1E-27
score: 96.8
IPR001734Sodium/solute symporterPROSITEPS50283NA_SOLUT_SYMP_3coord: 5..462
score: 41.748
NoneNo IPR availableCDDcd11474SLC5sbd_CHTcoord: 9..502
e-value: 9.21274E-179
score: 514.766

Blast
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BLAST of TCONS_00053673-protein vs. Swiss-Prot (Human)
Match: SC5A7 (High affinity choline transporter 1 OS=Homo sapiens GN=SLC5A7 PE=1 SV=1)

HSP 1 Score: 538.88 bits (1387), Expect = 0.000e+0
Identity = 284/554 (51.26%), Postives = 380/554 (68.59%), Query Frame = 0 
Query:    4 LNVAGLISIIIFYLAILGIGLFAAWRKNKHTKENAQTTQDETNEVILAGRTIGMFIGCFTMTATWVGGGYINGTAESVYNDG--LVWAQAPWGYATSLAMGGFFFARKMREAEYITMLDPLQDKYGRVMGAFLYIPAFLGETFWSASILAALGATLTVILGLNMNISVIVSACIAVGYTFFGGLYSVAYTDVVQLICIAVGLWLTVPFSLTNENVESIG------ARKEEWLGQLYGAKVGKWIDYAFLLICGGIPWQVYFQRVLSSKSAHRAQILSFVAAFGCIVLAIPAVLIGAAAKSADWGAVSGAVDANLVTNKTGEWVITDTRLVLPMVLQYLAPGWVSFIGLGAISAAVMSSADSSVLSASSMFGHNIYKLIIRKNASANEIIWVIRIGIIFVGIMATLVGLTVDSIYALFHLCSDLVFVILFPQLVGAVHIQDVNTYGSICAYIVGLFLRITGGEELIGFPATFKYP-YYDETYSNGKGSQNFPFRTLAMIISFITLVSVSKLAYYLFDNEILGENYD-FLGVLERRRNLAGKKGRRGEDDALPLQE 547
             +V GLI+II+FYL IL +G++AAWR      +N+ + ++ +  +I+ GR IG+ +G FTMTATWVGGGYINGTAE+VY  G  L WAQAP GY+ SL +GG FFA+ MR   Y+TMLDP Q  YG+ MG  L+IPA +GE FW+A+I +ALGAT++VI+ ++M+ISVI+SA IA  YT  GGLYSVAYTDVVQL CI VGLW++VPF+L++  V  IG        ++ WLG +  ++V  W+D   LL+ GGIPWQ YFQRVLSS SA  AQ+LSF+AAFGC+V+AIPA+LIGA   S DW   +      L   KT E    +  ++LP+VLQYL P ++SF GLGA+SAAVMSSADSS+LSASSMF  NIY+L  R+NAS  EI+WV+RI +   G  AT + L   ++Y L++L SDLV++++FPQL+  + ++  NTYG++  Y+ GLFLRITGGE  +       YP YY +   NG  +Q FPF+TLAM+ SF+T + +S LA YLF++  L    D F  V+ R       K    +++ + L E
Sbjct:    3 FHVEGLIAIIVFYLLILLVGIWAAWRT-----KNSGSAEERSEAIIVGGRDIGLLVGGFTMTATWVGGGYINGTAEAVYVPGYGLAWAQAPIGYSLSLILGGLFFAKPMRSKGYVTMLDPFQQIYGKRMGGLLFIPALMGEMFWAAAIFSALGATISVIIDVDMHISVIISALIATLYTLVGGLYSVAYTDVVQLFCIFVGLWISVPFALSHPAVADIGFTAVHAKYQKPWLGTVDSSEVYSWLDSFLLLMLGGIPWQAYFQRVLSSSSATYAQVLSFLAAFGCLVMAIPAILIGAIGASTDWNQTA----YGLPDPKTTE----EADMILPIVLQYLCPVYISFFGLGAVSAAVMSSADSSILSASSMFARNIYQLSFRQNASDKEIVWVMRITVFVFGASATAMALLTKTVYGLWYLSSDLVYIVIFPQLLCVLFVKGTNTYGAVAGYVSGLFLRITGGEPYLYLQPLIFYPGYYPD--DNGIYNQKFPFKTLAMVTSFLTNICISYLAKYLFESGTLPPKLDVFDAVVARHSEENMDKTILVKNENIKLDE 541
The following BLAST results are available for this feature:
BLAST of TCONS_00053673-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC5A70.000e+051.26High affinity choline transporter 1 OS=Homo sapien... [more]
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