TCONS_00053705-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053705-protein
Unique Name	TCONS_00053705-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1183

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053705-protein ID=TCONS_00053705-protein|Name=TCONS_00053705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1183bp
NATTTIKPLTNGTENATTTNKPLTNGTENATTTIKPSTNATENATTTIEP
KNQEYQSVRFENARYIFIEVPSKWMDAENDCVSRGGHLASIHSKEENDFI
TDEISKRENWYWWFGGVRKNNTFVWSAGTKMEYTLLFNDRLKDDSLTYPY
ICKIKDVETLATTLPPKTNVTLKHTTMSVATSSKETPELDVRSTFKKHPQ
SKYSFKTGGAFEINGCVLQTNIALTEPYQIFYLFNSIEKILITLPVSLVQ
ISASLSDLVFPPYQRNTSSYEDQGFYQCGFTVGNRSTILSNSIDVQFTDV
ASAKMNVRLDQEWNENLKNTSSENFKALEKEFIDDVMKMLPEENGVKPMV
RIIGFRKGSVIADVQILYPNVTQTSRRQKCKELEKVLEDEVKKSLTFKVT
NVDVSSLDCCPENEIGEEPFKGVDQLNETLVFQTITNNCTYKQSASNERQ
CHGNMKDGPRWSNVNLQNCPAKSPITNSLISLSLTKICTPTTFIDCQTPV
EVSGNLSQLINQTDSITTRQDLEYISIVLQNLALHPTAFLLENADDAKTI
VENVLLTISNVIGSNRTIVAQAQKAKQTSATILHFLDILAQRIGEIAAKL
NFNKTIKMIFKEQNIALVVLYSKPRQLEVIGGATSSQTMNLDIFSSHRKI
LGSLINNKTLATAKIPKEAFKNKSRIVYALLFNNDALFQTENQTIAVQSG
QPILSPISSKILAVTVGKEKVVNLSNPILLKFKKMDIGVTKDERKIYKYS
CVFWDTQKETPPKSTNGPPKSTNGFWSSRGCWKVNETQSDITCECNHLTN
FAILLDVTGKQSNPLELRIITWIGCGISLLGLFLTLLTYSIFKKLRAKLP
PKILMSLASSLSILLIVFLVGAERGSVVRSKLGCQIVAGILHYFMLTTFL
WMLIEAINLYRNFVKIFRSGGDGKFFKNSSRIAWGVPLLIVVINGAVKPG
SLGNDQFCVILGNSFYLALLLPVALILFINFIVLIMVLRSLSKNQGXALL
LPVALILFINLIVLIMVLGSLSKNQGSKITSTQKQSLATQTRITLACATL
LGLTWLFAILAVGDLSYTFQLLFTIFNSLQGFFIFVFYTLRNQDVRNEWK
RVLRSNQKLIIVASSTQLSDSTLNKVKKTGNKNENMKVFGNSDIPSSSEE
IDLSSSTGHLIKQRQHYSNQTTHFELEKNFKKE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033871	XLOC_033871	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053705	TCONS_00053705	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000832	GPCR_2_secretin-like
IPR001304	C-type_lectin-like
IPR000203	GPS
IPR000082	SEA_dom
IPR016186	C-type_lectin-like/link
IPR017981	GPCR_2-like
IPR016187	CTDL_fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0004888	transmembrane signaling receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007166	cell surface receptor signaling pathway

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0004888	transmembrane signaling receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000832	GPCR, family 2, secretin-like	PRINTS	PR00249	GPCRSECRETIN	coord: 967..992 score: 29.2 coord: 886..909 score: 31.43 coord: 819..843 score: 25.02 coord: 1070..1091 score: 29.2 coord: 926..951 score: 24.84 coord: 1040..1060 score: 23.81
IPR000832	GPCR, family 2, secretin-like	PFAM	PF00002	7tm_2	coord: 816..993 e-value: 2.2E-30 score: 105.6 coord: 1001..1084 e-value: 6.3E-9 score: 35.4
IPR001304	C-type lectin-like	SMART	SM00034	CLECT_2	coord: 53..153 e-value: 1.1E-10 score: 51.5
IPR001304	C-type lectin-like	PFAM	PF00059	Lectin_C	coord: 72..137 e-value: 6.6E-9 score: 36.4
IPR001304	C-type lectin-like	PROSITE	PS50041	C_TYPE_LECTIN_2	coord: 60..134 score: 12.212
IPR000203	GPS motif	SMART	SM00303	GPS_3	coord: 747..810 e-value: 1.1E-9 score: 48.2
IPR000203	GPS motif	PFAM	PF01825	GPS	coord: 750..804 e-value: 8.1E-13 score: 48.7
IPR000203	GPS motif	PROSITE	PS50221	GPS	coord: 748..810 score: 15.421
None	No IPR available	GENE3D	1.20.1070.10		coord: 808..1129 e-value: 1.9E-33 score: 115.2
None	No IPR available	CDD	cd00037	CLECT	coord: 65..154 e-value: 3.00458E-17 score: 78.8157
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 798..1107
IPR000082	SEA domain	PFAM	PF01390	SEA	coord: 308..395 e-value: 2.1E-6 score: 27.9
IPR000082	SEA domain	GENE3D	3.30.70.960		coord: 298..413 e-value: 7.0E-10 score: 38.5
IPR016186	C-type lectin-like/link domain	GENE3D	3.10.100.10		coord: 30..167 e-value: 2.7E-19 score: 68.9
IPR017981	GPCR, family 2-like	PROSITE	PS50261	G_PROTEIN_RECEP_F2_4	coord: 817..1092 score: 29.936
IPR016187	C-type lectin fold	SUPERFAMILY	56436	C-type lectin-like	coord: 54..155

Blast

[Close]

BLAST of TCONS_00053705-protein vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.100e-50
Identity = 145/462 (31.39%), Postives = 235/462 (50.87%), Query Frame = 0

Query:  650 ILGSLINNKTLATAKIPKEAFKNKSRIVYALLFNNDALFQTENQTIAVQSGQPILSPISSKILAVTVGKEKVV-NLSNPILLKFKKMDIGVTKDERKIYKYSCVFWDTQKETPPKSTNGPPKSTNGFWSSRGCWKVNETQSDIT-CECNHLTNFAILLDV---TGKQSNPLELRIITWIGCGISLLGLFLTLLTYSIFKKLRAKLPPKILMSLASSLSILLIVFLVGAERGSVVRSKLGCQIVAGI-LHYFMLTTFLWMLIEAINLYRNFVKIFRSGGDGKFFKNSSRIAWGVPLLIVVINGAVKPGSLGN----DQFCVILGNS-FYLALLLPVALILFINFIVLIMVLRSLSKNQGXALLLPVALILFINLIVLIMVLGSLSKNQGSKITSTQKQSLATQTRITLACATLLGLTWLFAILAVGDLSYTFQLLFTIFNSLQGFFIFVFYTLRNQDVRNEWK 1100
            IL S+   K+L T +IP     N   I++   F   +LF+T+N T A          +++ +++ ++  +  + NL++P+++  +   IG  ++  +++   C FWD +        NG      G W+S GC KV ET  + T C+C+HLT+F +L+D+   T    N   L +IT+ GCGIS + L + ++TY  F KLR   P KIL++L ++L +L +VFL+ +   S    K+G  I A + LHYF+L +F WM +EA+++Y   VK+F         K    + WG+P ++V I  +VK    G       FC I  +S FY++++    LI  +N  +   VL  L+  +                               S+I  T+++ +    + T++   LLGLTW FA  A G +   F  LF IFN+LQGFFIFVF+ +  + VR +W+
Sbjct: 2603 ILASIYLPKSL-TERIP---LSNLQTILFNF-FGQTSLFKTKNVTKA----------LTTYVVSASISDDMFIQNLADPVVITLQH--IGGNQNYGQVH---CAFWDFENN------NG-----LGGWNSSGC-KVKETNVNYTICQCDHLTHFGVLMDLSRSTVDSVNEQILALITYTGCGISSIFLGVAVVTYIAFHKLRKDYPAKILINLCTALLMLNLVFLINSWLSSF--QKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVFNIYIPNYILKFC-LVGWGIPAIMVAITVSVKKDLYGTLSPTTPFCWIKDDSIFYISVVAYFCLIFLMNLSMFCTVLVQLNSVK-------------------------------SQIQKTRRKMILHDLKGTMSLTFLLGLTWGFAFFAWGPMRNFFLYLFAIFNTLQGFFIFVFHCVMKESVREQWQ 2998

The following BLAST results are available for this feature:

BLAST of TCONS_00053705-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053705-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGRG4	1.100e-50	31.39	Adhesion G-protein coupled receptor G4 OS=Homo sap...	[more]

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TCONS_00053705-protein (polypeptide) - C. hemisphaerica