TCONS_00054303-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054303-protein
Unique NameTCONS_00054303-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length531

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054303-protein ID=TCONS_00054303-protein|Name=TCONS_00054303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp
MMEVANKQKEDDPSNSIEDYICNAKTFLLRSDGKSGVTMYDHLVSILSKM
IEKEPENAAELLKEFSRKEHKARFIPEKDTIEERIETTNKVNLANDQKNL
FNRKDIEVPNTVGDNEAEEEERLILADVMENAFYFEQAGIGLGREEVFRV
FLALKQLTDCYQLKSCRFWGKILGSQANYIIAEVEFRDGEDPHKENEDPD
NLSSSRISEANEPIEDEVDDIPKPDYKPPVTIPQEDYGEGCNSKIYYVCN
DAGLSWHRLPPVTPQQIHVARQIKKFCTGDLEAPIISYPPFPGTEIHYLR
AMIARISAATHISPQGYYIFEEDEDEEIDETARKTFIPNIEFEGIPVSDL
CDATNTFWVHHNPYILPQGRTTWFNPLQKNDEEEIEEEEDEEEDREEPDD
IEPEEGPPLLTPLSEDLEINSQTAWTANKSTGLVSQYAIAVMHSNLWPGA
HAFAVDKKFDNIYIGYGLKYSSENYSPPAPPAAQEEYPSGPEVTEAEDPT
VEQERALAAAQQEAMENEDEDEESEDYDEED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034243XLOC_034243Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054303TCONS_00054303Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006802Radial_spoke
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 500..530
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..531
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 381..413
IPR006802Radial spokehead-like proteinPFAMPF04712Radial_spokecoord: 23..511
e-value: 1.3E-186
score: 621.2

Blast
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BLAST of TCONS_00054303-protein vs. Swiss-Prot (Human)
Match: RSH4A (Radial spoke head protein 4 homolog A OS=Homo sapiens GN=RSPH4A PE=1 SV=1)

HSP 1 Score: 433.335 bits (1113), Expect = 6.969e-145
Identity = 253/501 (50.50%), Postives = 345/501 (68.86%), Query Frame = 0 
Query:   17 IEDYICNAKTFLLRSDGKSGVTMYDHLVSILSKMIEKEPENAAELLKEFSRKEHKARFIPEKDTIEERIETTNKVNLANDQKNLFNRKDIEVPNTVGDNEAEEEERLILADVMENAFYFEQAGIGLGREEVFRVFLALKQLTDCYQLKSCRFWGKILGSQANYIIAEVEFRDGEDPHKENEDPDNLSSSRISEANEPIEDEVDDIPKPDYKPPVTIPQEDYGEGCNSKIYYVCNDAGLSWHRLPPVTPQQIHVARQIKKFCTGDLEAPIISYPPFPGTEIHYLRAMIARISAATHISPQGYYIFEEDEDEEIDETA--RKTFIPNIEFEGIPVSDLCDATNTFWVHHNPYILPQGRTTWFNPLQKNDEEEIEEEEDEEEDREEPDDIEPEEGPPLLTPLSEDLEINSQTAWTANKSTGLVSQYAIAVMHSNLWPGAHAFAVDKKFDNIYIGYGLKYSSENYSPPAPPAAQEEYPSGPEVTEAEDPTVEQERALAAAQQEAM 515
            +E  I NAK +LL++   SG  +YDHL ++L+K++ + PENA ++ +  S+    A F  + D ++   E      +A  QK LF +  +E  +   ++E  E     L +VME+AFYFEQAG+GLG +E +R+FLALKQLTD + ++ CRFWGKILG + NYI+AEVEFR+GED  +E  + ++++  R +  +E  EDE D++PK  YK P  IP+E+   G N  +Y+VCN+ G  W +LPPV P QI +AR+IKKF TG L+APIISYPPFPG E +YLRA IARISA TH+SP G+Y F E+E EE +E    R +F  N +FEGI V DL ++ +  WVHH  +IL QGR  WFN +QKN+EEE EE+E++++     D IE E G PLLTP+SEDLEI +   WT   S+ L+ QYAIAV+ SNLWPGA+AF+  KKF+N YIG+G KYS +NY+PP PP   +EYPSGPE+TE +DP+VE+E+A  AAQ+  +
Sbjct:  207 LEITIQNAKAYLLKTSSNSGFNLYDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKALFLQGHLEGVDQELEDEIAEN---ALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLTDTHPIQRCRFWGKILGLEMNYIVAEVEFREGED--EEEVEEEDVAEERDNGESEAHEDEEDELPKSFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEEAEGGRNSFEENPDFEGIQVIDLVESLSN-WVHHVQHILSQGRCNWFNSIQKNEEEEEEEDEEKDDS----DYIEQEVGLPLLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQSNLWPGAYAFSNGKKFENFYIGWGHKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSVEEEQAFRAAQEAVL 697
The following BLAST results are available for this feature:
BLAST of TCONS_00054303-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSH4A6.969e-14550.50Radial spoke head protein 4 homolog A OS=Homo sapi... [more]
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