TCONS_00054303-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054303-protein
Unique Name	TCONS_00054303-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	531

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054303-protein ID=TCONS_00054303-protein|Name=TCONS_00054303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp
MMEVANKQKEDDPSNSIEDYICNAKTFLLRSDGKSGVTMYDHLVSILSKM
IEKEPENAAELLKEFSRKEHKARFIPEKDTIEERIETTNKVNLANDQKNL
FNRKDIEVPNTVGDNEAEEEERLILADVMENAFYFEQAGIGLGREEVFRV
FLALKQLTDCYQLKSCRFWGKILGSQANYIIAEVEFRDGEDPHKENEDPD
NLSSSRISEANEPIEDEVDDIPKPDYKPPVTIPQEDYGEGCNSKIYYVCN
DAGLSWHRLPPVTPQQIHVARQIKKFCTGDLEAPIISYPPFPGTEIHYLR
AMIARISAATHISPQGYYIFEEDEDEEIDETARKTFIPNIEFEGIPVSDL
CDATNTFWVHHNPYILPQGRTTWFNPLQKNDEEEIEEEEDEEEDREEPDD
IEPEEGPPLLTPLSEDLEINSQTAWTANKSTGLVSQYAIAVMHSNLWPGA
HAFAVDKKFDNIYIGYGLKYSSENYSPPAPPAAQEEYPSGPEVTEAEDPT
VEQERALAAAQQEAMENEDEDEESEDYDEED

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034243	XLOC_034243	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054303	TCONS_00054303	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006802	Radial_spoke

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 500..530
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 475..531
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 381..413
IPR006802	Radial spokehead-like protein	PFAM	PF04712	Radial_spoke	coord: 23..511 e-value: 1.3E-186 score: 621.2

Blast

[Close]

BLAST of TCONS_00054303-protein vs. Swiss-Prot (Human)
Match: RSH4A (Radial spoke head protein 4 homolog A OS=Homo sapiens GN=RSPH4A PE=1 SV=1)

HSP 1 Score: 433.335 bits (1113), Expect = 6.969e-145
Identity = 253/501 (50.50%), Postives = 345/501 (68.86%), Query Frame = 0

Query:   17 IEDYICNAKTFLLRSDGKSGVTMYDHLVSILSKMIEKEPENAAELLKEFSRKEHKARFIPEKDTIEERIETTNKVNLANDQKNLFNRKDIEVPNTVGDNEAEEEERLILADVMENAFYFEQAGIGLGREEVFRVFLALKQLTDCYQLKSCRFWGKILGSQANYIIAEVEFRDGEDPHKENEDPDNLSSSRISEANEPIEDEVDDIPKPDYKPPVTIPQEDYGEGCNSKIYYVCNDAGLSWHRLPPVTPQQIHVARQIKKFCTGDLEAPIISYPPFPGTEIHYLRAMIARISAATHISPQGYYIFEEDEDEEIDETA--RKTFIPNIEFEGIPVSDLCDATNTFWVHHNPYILPQGRTTWFNPLQKNDEEEIEEEEDEEEDREEPDDIEPEEGPPLLTPLSEDLEINSQTAWTANKSTGLVSQYAIAVMHSNLWPGAHAFAVDKKFDNIYIGYGLKYSSENYSPPAPPAAQEEYPSGPEVTEAEDPTVEQERALAAAQQEAM 515
            +E  I NAK +LL++   SG  +YDHL ++L+K++ + PENA ++ +  S+    A F  + D ++   E      +A  QK LF +  +E  +   ++E  E     L +VME+AFYFEQAG+GLG +E +R+FLALKQLTD + ++ CRFWGKILG + NYI+AEVEFR+GED  +E  + ++++  R +  +E  EDE D++PK  YK P  IP+E+   G N  +Y+VCN+ G  W +LPPV P QI +AR+IKKF TG L+APIISYPPFPG E +YLRA IARISA TH+SP G+Y F E+E EE +E    R +F  N +FEGI V DL ++ +  WVHH  +IL QGR  WFN +QKN+EEE EE+E++++     D IE E G PLLTP+SEDLEI +   WT   S+ L+ QYAIAV+ SNLWPGA+AF+  KKF+N YIG+G KYS +NY+PP PP   +EYPSGPE+TE +DP+VE+E+A  AAQ+  +
Sbjct:  207 LEITIQNAKAYLLKTSSNSGFNLYDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKALFLQGHLEGVDQELEDEIAEN---ALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLTDTHPIQRCRFWGKILGLEMNYIVAEVEFREGED--EEEVEEEDVAEERDNGESEAHEDEEDELPKSFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEEAEGGRNSFEENPDFEGIQVIDLVESLSN-WVHHVQHILSQGRCNWFNSIQKNEEEEEEEDEEKDDS----DYIEQEVGLPLLTPISEDLEIQNIPPWTTRLSSNLIPQYAIAVLQSNLWPGAYAFSNGKKFENFYIGWGHKYSPDNYTPPVPPPVYQEYPSGPEITEMDDPSVEEEQAFRAAQEAVL 697

The following BLAST results are available for this feature:

BLAST of TCONS_00054303-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054303-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RSH4A	6.969e-145	50.50	Radial spoke head protein 4 homolog A OS=Homo sapi...	[more]

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TCONS_00054303-protein (polypeptide) - C. hemisphaerica