Six4/5 (polypeptide) - C. hemisphaerica

Overview
NameSix4/5
Unique NameTCONS_00054936-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054936-protein ID=TCONS_00054936-protein|Name=Six4/5|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MSTTTFDTAEIQKHANVVMNYTAEQIECVCDALIQSQNYDTLAKLLWSLP
RNEMNHSSECILKSRAYVALHQGRFRDLYTLLESHDFDPDLHPVMQQMWH
DAHYLEAEKIRGRPLGAVEKYRIRRKYPLPRTIWDGEETVYCFKEKSRQV
LKDWYDKNKYPTPQDKRILAKRTELTLVQVSNWFKNRRQRDKPNGEGEEE
KIGRSISVEPWSTSLNVPYLNNNNNTTNNNNNNLPNNNYLMSTTKDNLKN
SKTNVGYPDTVSVHPHDAVKQSPSYFADISCSM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034623XLOC_034623Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054936TCONS_00054936Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR031701SIX1_SD
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 136..198
e-value: 1.3E-14
score: 64.6
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 143..192
e-value: 3.5E-12
score: 45.8
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 143..194
score: 14.107
NoneNo IPR availableGENE3D1.10.10.60coord: 141..202
e-value: 1.7E-16
score: 58.9
NoneNo IPR availableCDDcd00086homeodomaincoord: 141..194
e-value: 1.63448E-14
score: 65.3424
IPR031701Homeobox protein SIX1, N-terminal SD domainPFAMPF16878SIX1_SDcoord: 21..131
e-value: 1.0E-42
score: 145.1
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 169..192
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 134..195

Blast
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BLAST of Six4/5 vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 6.091e-82
Identity = 110/182 (60.44%), Postives = 136/182 (74.73%), Query Frame = 0 
Query:   19 MNYTAEQIECVCDALIQSQNYDTLAKLLWSLPRNEMNHSSECILKSRAYVALHQGRFRDLYTLLESHDFDPDLHPVMQQMWHDAHYLEAEKIRGRPLGAVEKYRIRRKYPLPRTIWDGEETVYCFKEKSRQVLKDWYDKNKYPTPQDKRILAKRTELTLVQVSNWFKNRRQRDKPNGEGEEE 200
              +T EQ+ CVC+ L Q  N + L + LWSLP  +  H +E +LK++A VA H+G FR+LY +LESH F P  HP +QQ+W  AHY+EAEK+RGRPLGAV KYR+RRK+PLPRTIWDGEET YCFKEKSR VL++WY  N YP+P++KR LA+ T LT  QVSNWFKNRRQRD+     E E
Sbjct:    7 FGFTQEQVACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERE 188
The following BLAST results are available for this feature:
BLAST of Six4/5 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIX16.091e-8260.44Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1... [more]
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