TCONS_00055136-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055136-protein
Unique NameTCONS_00055136-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055136-protein ID=TCONS_00055136-protein|Name=TCONS_00055136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MDRRVTFLKFFGIISITFAIRYELIGQNKKPNKPPYSIVNVKFEQHCFSK
CHHDEKCASFLIQTTSKDNPITCHFYNTTTTNLIESQTALQGTKLYTDIQ
DCRDLYHLGYKASGIYSLNLPGGVGTKDVRCDMENRGGGWMVFTYRMIGQ
HDWNADWETYKNGFGEHPGDFYIGNEILHKITTSGDYEFYYISEDLETGQ
KYNGWYEHFYIESESDLYRLRLLGNSEGTVNTLNIHNNRAFSTIDRDNDN
HETTFCARDTRKGANWWYRCGQFSPFGRFHDTTSAHVCMGVETIPKKCSK
YFQMMFRRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034744XLOC_034744Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055136TCONS_00055136Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainSMARTSM00186FBG_2coord: 97..309
e-value: 3.6E-28
score: 109.6
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainPFAMPF00147Fibrinogen_Ccoord: 100..300
e-value: 4.2E-37
score: 128.0
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainPROSITEPS51406FIBRINOGEN_C_2coord: 93..309
score: 32.758
IPR002181Fibrinogen, alpha/beta/gamma chain, C-terminal globular domainSUPERFAMILY56496Fibrinogen C-terminal domain-likecoord: 95..287
IPR014715Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2GENE3D4.10.530.10coord: 241..294
e-value: 8.7E-10
score: 38.1
IPR014716Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1GENE3D3.90.215.10coord: 54..240
e-value: 1.1E-44
score: 152.3

Blast
[Close]
BLAST of TCONS_00055136-protein vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.454e-29
Identity = 77/208 (37.02%), Postives = 114/208 (54.81%), Query Frame = 0 
Query:   79 TTTNLIESQTALQGTKLYTDIQDCRDLYHLGYKASGIYSLNLPGGVGTK-DVRCDMENRGGGWMVFTYRMIGQHDWNADWETYKNGFGEHPGDFYIGNEILHKITTSGDYEFYYISEDLETGQKYN-GWYEHFYIESESDLYRLRLLGNSEGTV-NTLNIHNNRAFSTIDRDNDNHETTFCARDTRKGANWWYR-CGQFSPFGRFHDT 282
            TT + I S     G +++   QDC      G   SG+Y + L G +  K  V CDM   GGGW+VF  R  GQ D+   W  Y+ GFG    +F++G + +H+IT+ G YE   +  D+  GQ+     Y+ F +E   +LY+LR +G+  GT  ++L+ H  R FST DRDND    T CA  + KGA WWY+ C + +  G++ ++
Sbjct: 1115 TTWSSITSTAFTTGGRVFPHPQDCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHRITSQGRYE---LRVDMRDGQEAAFASYDRFSVEDSRNLYKLR-IGSYNGTAGDSLSYHQGRPFSTEDRDNDV-AVTNCAM-SYKGA-WWYKNCHRTNLNGKYGES 1315
The following BLAST results are available for this feature:
BLAST of TCONS_00055136-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENR1.454e-2937.02Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3[more]
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