TCONS_00055167-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055167-protein
Unique Name	TCONS_00055167-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1016

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055167-protein ID=TCONS_00055167-protein|Name=TCONS_00055167-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1016bp
MNCSNYCHLEGKACDKEGFIAPLDIFKSLDTNCFDWSIGQSSITPYFDNS
TKRCYGLIEQKEVDCQSTPNDDQQRLCKCIEKTDLTEGKWSSWSECSASC
NGQKTRHRICDFDDPDFQCTSQTQTENCSAPCPVNGGLSSWSSWEECTKT
CGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSKICGVGKCPVNGGWTNWTE
WSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPCEEI
DVEISVSFDEEFQGDDFVKQYMYKLRFDKFRVLLNNSGFDESIKEIDVNR
LRSGSVITDMTITFQHLDSFQLIFMMDSFDNGQVFEIRGGKISITFDKPS
NFSTDKVPPAPTDISTQQQNGSWIITWSKVNDSLSSYGNISGYIFFYKES
FEPSSSYRGIATKDFLIILNNLKINTEYVFRILAYNDIGNGIPTQQYSLG
TTQNNFKDPSKVVLNLQADATSFSTIQVTWDLDPSEENSISGYHVTYTGN
DTTNQRTVFHPSTFIGLEDLEQWTDYVIEVCSFNSFGQSPCQTTAATTLM
KDGLPEVEVSGLEQIYKTHNEIHLSWLPLETTITEDLMGYHVKIWLHMQD
GRFVVGSSVAEESVSLAVNSFRFSSLESNSIYKVSVSVENSRGKGQERLI
EASTCACDEIIYTNFFVQPPYTSIDVNSQSFELQYNGLFPDLLKKIIPET
CGVCQMTSTQNYTTQLSLKSNGNSGLAFKRKYQRVLDDIDSTSKITFPMT
SSPNDQSKFVSIIDYPGAVLLNRKVDSEELVHQILQKLSSCWTIVFIYLL
LCVLSALVLWGLDHFSFSTNQQFSKSLADGLKETFYYAFITQSTVGYGDM
VVKTKRARCFIMFWMLVCQILTSLIVGALSSAFTTVVIEDVSLYGKKVGA
LKGSFEVNLAIVRNAEIDNGTIYTTPTELLTALTQKEVDGVLMDSYTASS
MRNAIDLSGAHPVKLVEYPRYYGVVLSGHLKYIAHSMEASIHFHEKDIVE
MIAGQTDKMKVSDFFS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034752	XLOC_034752	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055167	TCONS_00055167	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt
IPR003961	FN3_dom
IPR013783	Ig-like_fold
IPR001638	Solute-binding_3/MltF_N
IPR013099	K_chnl_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 87..133 e-value: 1.3E-7 score: 41.3 coord: 195..248 e-value: 9.0E-10 score: 48.5 coord: 138..190 e-value: 5.4E-15 score: 65.8
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 89..131 e-value: 1.7E-4 score: 21.6 coord: 197..247 e-value: 8.2E-9 score: 35.5 coord: 139..189 e-value: 9.6E-10 score: 38.4
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 191..247 e-value: 1.1E-13 score: 50.8 coord: 134..189 e-value: 5.8E-15 score: 54.8
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 84..133 score: 10.509
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 192..248 score: 12.108
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 135..190 score: 12.72
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 131..189
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 88..128
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 189..247
IPR003961	Fibronectin type III	SMART	SM00060	FN3_2	coord: 459..539 e-value: 1.1E-4 score: 31.5 coord: 556..645 e-value: 0.061 score: 22.5 coord: 358..441 e-value: 2.6E-6 score: 37.0
IPR003961	Fibronectin type III	PFAM	PF00041	fn3	coord: 560..647 e-value: 1.0E-6 score: 28.9 coord: 464..540 e-value: 1.8E-7 score: 31.3
IPR003961	Fibronectin type III	PROSITE	PS50853	FN3	coord: 358..455 score: 13.736
IPR003961	Fibronectin type III	PROSITE	PS50853	FN3	coord: 462..552 score: 13.381
IPR003961	Fibronectin type III	PROSITE	PS50853	FN3	coord: 558..659 score: 10.454
IPR003961	Fibronectin type III	CDD	cd00063	FN3	coord: 465..540 e-value: 7.80753E-9 score: 53.2691
IPR003961	Fibronectin type III	CDD	cd00063	FN3	coord: 568..645 e-value: 1.05195E-4 score: 40.5575
IPR003961	Fibronectin type III	CDD	cd00063	FN3	coord: 358..451 e-value: 8.40777E-9 score: 53.2691
IPR003961	Fibronectin type III	SUPERFAMILY	49265	Fibronectin type III	coord: 357..548
IPR003961	Fibronectin type III	SUPERFAMILY	49265	Fibronectin type III	coord: 553..646
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 555..656 e-value: 3.6E-7 score: 29.8
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 461..549 e-value: 2.1E-12 score: 46.7
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 353..460 e-value: 2.5E-12 score: 46.4
None	No IPR available	GENE3D	2.30.90.10		coord: 86..132 e-value: 2.0E-6 score: 27.7
None	No IPR available	GENE3D	1.10.287.70		coord: 772..883 e-value: 2.5E-16 score: 59.0
None	No IPR available	GENE3D	3.40.190.10		coord: 884..968 e-value: 3.9E-5 score: 23.3
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 789..887
None	No IPR available	SUPERFAMILY	53850	Periplasmic binding protein-like II	coord: 892..977
IPR001638	Solute-binding protein family 3/N-terminal domain of MltF	PFAM	PF00497	SBP_bac_3	coord: 887..979 e-value: 1.4E-6 score: 27.8
IPR013099	Potassium channel domain	PFAM	PF07885	Ion_trans_2	coord: 829..883 e-value: 4.7E-9 score: 36.0

Blast

[Close]

BLAST of TCONS_00055167-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 5.920e-36
Identity = 75/178 (42.13%), Postives = 98/178 (55.06%), Query Frame = 0

Query:   79 CIEKTDLTEGKWS---SWSECSASCNG-QKTRHRICDFDDPDF---QCT-SQTQTENC-SAPCPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSKICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 247
            C E+     GKW+   SWS CS SC G  + R R C    P +   +C  S  Q++ C S PCP +G  S WS W  C++TC GG+  RYR C NP PSNGG  C G  +Q + C    CPV+G W +W  WS  CS  C  G  TR+R C +P P+ GG+ C G++T+   C+   C
Sbjct: 4692 CNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQ-CSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868

HSP 2 Score: 142.124 bits (357), Expect = 6.883e-34
Identity = 68/165 (41.21%), Postives = 92/165 (55.76%), Query Frame = 0

Query:   89 KWSSWSECSASC-NGQKTRHRICDFDDP---DFQCT-SQTQTENC-SAPCPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSKICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 247
            +WS+W  CS +C  G + R R+C+   P      C  S  +  NC + PCPV+G  S WS WEECT++CG G Q R R C NPS  +GG  C G   +  +C +  CPV+G W+ W  W + CS+ C  G  TR R C NP P +GG +C G  T+ + C+   C
Sbjct: 4534 QWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGT-CSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697

HSP 3 Score: 139.043 bits (349), Expect = 5.831e-33
Identity = 76/212 (35.85%), Postives = 106/212 (50.00%), Query Frame = 0

Query:   45 PYFDNSTKRCYGL-IEQKEVDCQSTPNDDQQRLCKCIEKTDLTEGKWSSWSECSASC-NGQKTRHRICDFDDPDFQCTSQTQTENCSA-------PCPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSKICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 247
            P   N  K C G  +E +  +CQ+ P         C    D +  +WS W EC+ SC  G +TR R C+  +P  Q   +    N          PCPV+G  S+W  W  C+++CG G Q R R C NP P+ GG++C G   Q ++C    CP++G W  W  W SACS  C  G   R R C++P P YGG+ C+G+  +   C+  PC
Sbjct: 4559 PLPANGGKPCQGSDLEMR--NCQNKP---------C--PVDGSWSEWSLWEECTRSCGRGNQTRTRTCN--NPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASW-SACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754

HSP 4 Score: 115.546 bits (288), Expect = 8.026e-26
Identity = 53/139 (38.13%), Postives = 75/139 (53.96%), Query Frame = 0

Query:  113 DDPDFQCTSQTQTENCSAPCPV----NGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSKICGVGKCPVNGGWTNWTEWSSACSKPCNTGHVTRQRFCTNPQPLYGGQFCQGNSTEYKGCHFHPC 247
            D  +F+C ++    +     PV    +GG S WS+W  C+ TCG G Q R R C  P P+NGG  C G   + + C    CPV+G W+ W+ W   C++ C  G+ TR R C NP   +GG+ C+GN+ E   C+  PC
Sbjct: 4503 DTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEE-CTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640

HSP 5 Score: 87.4261 bits (215), Expect = 3.342e-17
Identity = 43/107 (40.19%), Postives = 55/107 (51.40%), Query Frame = 0

Query:   90 WSSWSECSASCNG-QKTRHRICDFDDPDFQCTS----QTQTENCSAP-CPVNGGLSSWSSWEECTKTCGGGRQHRYRYCTNPSPSNGGAFCVGLFNQSKICGVGKCP 190
            WS W  CS +CNG Q  R+R CD   P     +     +Q + C+   CPV+G   SW SW +C+ +CGGG + R R C +P P  GG  C G   Q   C V  CP
Sbjct: 4763 WSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869

The following BLAST results are available for this feature:

BLAST of TCONS_00055167-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055167-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	5.920e-36	42.13	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00055167-protein (polypeptide) - C. hemisphaerica