TCONS_00055273-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055273-protein
Unique Name	TCONS_00055273-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	348

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055273-protein ID=TCONS_00055273-protein|Name=TCONS_00055273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
MLCRRHGRPSTLVLITILQMAALVFFFGITTHLHSNVDSSVKTNIQQVRN
ELSYRFHQKIESVKTIVRIDPSLKPRNIKLLNLQDIQPFRGNFLFLVNSN
IGNKERRTSIRKHWANQTKFNQHRKKFHNVSFKAYFMTGFKAEKFDLAKT
ESVKYGDLLITNRTEDYWDFSRRAMISFYWTIENCNYDYLLKADDDIFIH
IPNLFTFLYKDPYVLKHHDRLYAGYIIMHGKPHRNLKFKWGVTYEEWGAD
AYPPFSTGMGFILSRFIIEKMIPHFDWEKPFRVDDVYIGHLVYMAQISNI
GIRNSVGQEFSRFNDPKKCPIQSKAIVYHQVLTEDCMRKLTESSLKVK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034816	XLOC_034816	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055273	TCONS_00055273	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002659	Glyco_trans_31

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008378	galactosyltransferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006486	protein glycosylation

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0016020	membrane
molecular_function	GO:0008378	galactosyltransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002659	Glycosyl transferase, family 31	PFAM	PF01762	Galactosyl_T	coord: 105..299 e-value: 2.1E-32 score: 112.5

Blast

[Close]

BLAST of TCONS_00055273-protein vs. Swiss-Prot (Human)
Match: B3GN4 (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4 OS=Homo sapiens GN=B3GNT4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.841e-23
Identity = 59/212 (27.83%), Postives = 104/212 (49.06%), Query Frame = 0

Query:   93 FLFLVNSNIGNKERRTSIRKHWANQTKFNQHRKKFHNVSFKAYFMTGF--KAEKFDLAKTESVKYGDLLITNRTEDYWDFSRRAMISFYWTIENC-NYDYLLKADDDIFIHIPNLFTFLYK-DPYVLKHHDRLYAGYIIMHGKPHRNLKFKWGVTYEEWGADAYPPFSTGMGFILSRFIIEKMIPHFDWEKPFRVDDVYIGHLVYMAQISNI 300
             L  + S  G+ ERR +IR  W     + + R+       K  F+ G    A    L   ES ++ D+L  + TED+++ + + +    W +  C    ++LK DDD+F+H+PN+  FL   DP        L  G +I    P+RN K K+ +    + A  YPP++ G G+++SR  + ++    +  + F +DDV++G  +    +S +
Sbjct:  120 LLLAIKSQPGHVERRAAIRSTWGRVGGWARGRQ------LKLVFLLGVAGSAPPAQLLAYESREFDDILQWDFTEDFFNLTLKELHLQRWVVAACPQAHFMLKGDDDVFVHVPNVLEFLDGWDPA-----QDLLVGDVIRQALPNRNTKVKYFIPPSMYRATHYPPYAGGGGYVMSRATVRRLQAIMEDAELFPIDDVFVGMCLRRLGLSPM 320

The following BLAST results are available for this feature:

BLAST of TCONS_00055273-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055273-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
B3GN4	8.841e-23	27.83	N-acetyllactosaminide beta-1,3-N-acetylglucosaminy...	[more]

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TCONS_00055273-protein (polypeptide) - C. hemisphaerica