TCONS_00055420-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055420-protein
Unique NameTCONS_00055420-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055420-protein ID=TCONS_00055420-protein|Name=TCONS_00055420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
MLHDFKTAQPIEFYKHFLKENVRPDGRELLKFRDALLNIGSINTARGSAL
VRLGHTMVICGISAELAEPKATTPDKGFFVPNVDLPPSCSNKYRPGPPSD
DAQILSQFVLDVATNSEVLKLENLCIATKKLAWVIYADIQCISHDGNLKD
AIIAALYAALRNTKLPTVEYNEETADVQVKQDQLFQLPIQTCPVSSTFAL
FQDEILLADPTNEEEEISNGTITIVVNSEGKLCMVSKPGGAEMKEEKLKV
CIRTALKRHAEVLSLVTTALGEDEPVR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034876XLOC_034876Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055420TCONS_00055420Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom
IPR015847ExoRNase_PH_dom2
IPR001247ExoRNase_PH_dom1
IPR020568Ribosomal_S5_D2-typ_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domainGENE3D3.30.230.70coord: 7..277
e-value: 4.4E-77
score: 258.7
IPR015847Exoribonuclease, phosphorolytic domain 2PFAMPF03725RNase_PH_Ccoord: 193..257
e-value: 4.3E-14
score: 52.2
IPR015847Exoribonuclease, phosphorolytic domain 2SUPERFAMILY55666Ribonuclease PH domain 2-likecoord: 187..275
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 32..166
e-value: 1.0E-23
score: 84.2
NoneNo IPR availableCDDcd11369RNase_PH_RRP43coord: 6..266
e-value: 2.52319E-119
score: 344.156
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 202..216
coord: 4..171

Blast
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BLAST of TCONS_00055420-protein vs. Swiss-Prot (Human)
Match: EXOS8 (Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.133e-104
Identity = 142/275 (51.64%), Postives = 196/275 (71.27%), Query Frame = 0 
Query:    1 MLHDFKTAQPIEFYKHFLKENVRPDGRELLKFRDALLNIGSINTARGSALVRLGHTMVICGISAELAEPKATTPDKGFFVPNVDLPPSCSNKYRPGPPSDDAQILSQFVLDVATNSEVLKLENLCIATKKLAWVIYADIQCISHDGNLKDAIIAALYAALRNTKLPTVEYNEETADVQVKQDQLFQLPIQTCPVSSTFALFQDEILLADPTNEEEEISNGTITIVVNSEGKLCMVSKPGGAEMKEEKLKVCIRTALKRHAEVLSLVTTALGEDEP 275
            M   FKT +P+E+Y+ FLKEN RPDGREL +FR   +NIGSI+TA GSALV+LG+T VICG+ AE A P    PDKG+ VPNVDLPP CS+++R GPP ++AQ+ SQF+ DV  NS++++ E+LCI+  KL WV+Y D+ C+ +DGN+ DA   AL AAL+N +LP V  NEETA  +V   +   L I+T PV+++FA+F D +L+ DPT EEE ++ GT+TIV++ EGKLC + KPGG+ +   KL+ C+  A+ RH EV  L+   +   +P
Sbjct:    1 MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKKSYLNIRTHPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMKP 275
The following BLAST results are available for this feature:
BLAST of TCONS_00055420-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS81.133e-10451.64Exosome complex component RRP43 OS=Homo sapiens GN... [more]
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