TCONS_00056061-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056061-protein
Unique NameTCONS_00056061-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056061-protein ID=TCONS_00056061-protein|Name=TCONS_00056061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
NLEAKHGVSGFHDAQEELEKVSTMKGELDEKKGKTLEEMSQLVVQLTNSI
SEKKNSLAPVIKELRPLRQQAQELSVEYEERKGTYETTAAGLESNMSKLD
QEVKALREEVLAEESRYHYMESMIEVLEVQQQRIDEEIKSYVNTDGSKKS
LRDKYSQRIHEQEVLGKVSLLLXKYSQRIHEQEVLGKQLREKQKYLRENH
APNMRQMKMWTDLTQLLKCKKESLSGPTTNTVEDPALYDEQDHLVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035284XLOC_035284Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056061TCONS_00056061Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 89..116
NoneNo IPR availableGENE3D1.20.5.50coord: 8..144
e-value: 5.4E-5
score: 22.4

Blast
[Close]
BLAST of TCONS_00056061-protein vs. Swiss-Prot (Human)
Match: IFT81 (Intraflagellar transport protein 81 homolog OS=Homo sapiens GN=IFT81 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 5.483e-66
Identity = 116/223 (52.02%), Postives = 159/223 (71.30%), Query Frame = 0 
Query:    2 LEAKHGVSGFHDAQEELEKVSTMKGELDEKKGKTLEEMSQLVVQLTNSISEKKNSLAPVIKELRPLRQQAQELSVEYEERKGTYETTAAGLESNMSKLDQEVKALREEVLAEESRYHYMESMIEVLEVQQQRIDEEIKSYVNTDGSKKSLRDKYSQRIHEQEVLGKVSLLLXKYSQRIHEQEVLGKQLREKQKYLRENHAPNMRQMKMWTDLTQLLKCKKESL 224
            +E K G+SG+   QEELE+VS +K E+DE KG+TL++MS++V +L + +SEKK++LA VIKELR LRQ+ QEL+ E +E+K  Y++ AAGLESN SKL+QEV+ LREE L EESRYHY   MI+ LEVQ +R  +E+K+Y+++D  +K       + I EQ            Y++   EQE LGK+LREKQK +RE+H PNM+Q KMW DL QL++CKK+  
Sbjct:  449 MEEKKGISGYSYTQEELERVSALKSEVDEMKGRTLDDMSEMVKKLYSLVSEKKSALASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVRRLREECLQEESRYHYTNCMIKNLEVQLRRATDEMKAYISSDQQEK------RKAIREQ------------YTKNTAEQENLGKKLREKQKVIRESHGPNMKQAKMWRDLEQLMECKKQCF 653
The following BLAST results are available for this feature:
BLAST of TCONS_00056061-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFT815.483e-6652.02Intraflagellar transport protein 81 homolog OS=Hom... [more]
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