TCONS_00056553-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056553-protein
Unique Name	TCONS_00056553-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	453

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056553-protein ID=TCONS_00056553-protein|Name=TCONS_00056553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
MSLVFILVLIAAIQNHAEIIEPQNKKTFERKINTTPSYGVPYAYKINTTS
SDDAPNSNKSNVILNGGPCQRKPPSAKDSVFITIFSLIFIVGVTGNIVAI
VIIVLSKRLNSMPTNLFVVALAVCDIGAITFVIPIRIDNLFHSHNFCFNA
HVCRMFTFTELLFHSASISHLFVIAIERFVAVNYPFVYQRVMNRTFTIML
SLYTWCYALVWACLSQFNWEDPSNRSTWFYEDSRTKLCLVRNRIYFNVSL
IMVYILPLAVMGGLYLSILRVALKQARIIESLSVHRDQSVKKQRREVRAT
KTLAIIYGAFTVCWLPVSLISLTVQWVPHKYREFRTDFPKLSEVIFALFI
EVLPTLNSSLNPFLYLFFNKKVRQEMQSYYERFRNISPTFQMDSDSSIGQ
VAIRSKYLGDNSKLSTNFESNSNHNQSTTKPTEEQNRQNIDELNPGRTSS
VRL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035633	XLOC_035633	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056553	TCONS_00056553	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 347..373 score: 30.48 coord: 114..135 score: 28.46 coord: 160..182 score: 28.88 coord: 299..323 score: 31.5 coord: 246..269 score: 24.66 coord: 80..104 score: 23.53
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 95..365 e-value: 1.3E-39 score: 136.0
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 166..182
None	No IPR available	GENE3D	1.20.1070.10		coord: 45..445 e-value: 2.2E-66 score: 223.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 414..453
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 74..388
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 95..365 score: 36.962

Blast

[Close]

BLAST of TCONS_00056553-protein vs. Swiss-Prot (Human)
Match: HRH2 (Histamine H2 receptor OS=Homo sapiens GN=HRH2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.040e-27
Identity = 92/330 (27.88%), Postives = 164/330 (49.70%), Query Frame = 0

Query:   54 APNSNKSNVILNGGPCQRKPPSAKDSVFITI-FSLIFIVGVTGNIVAIVIIVLSKRLNSMPTNLFVVALAVCDIGAITFVIPIRIDNLFH-SHNFCFNAHVCRMFTFTELLFHSASISHLFVIAIERFVAVNYPFVYQRVMNRTFTIMLSLYTWCYALVWACLS-QFNWEDPSNRSTWFYEDSRTKLCLVRNRIYFNVSLIMVYILPLAVMGGLYLSILRVALKQARIIESLSVHRDQSVKKQRREVRATKTLAIIYGAFTVCWLPVSLISLTVQWVPHKYREFRTDFPKLSEVIFALFIEVLPTLNSSLNPFLYLFFNKKVRQEMQSYY 380
            APN   S+  L+   C+         + IT+  +++ ++ V GN+V  + + L++RL ++ TN F+V+LA+ D+     V+P     ++  S  + F    C ++T  +++  +ASI +LF+I+++R+ AV  P  Y  ++      +  +  W  ++  + LS    W   +  S   +  S+ K+ +  N +Y  V  ++ + LPL +M   Y  I +VA  QA+ I  +S  +  ++    RE +AT TLA + GAF +CW P         +    YR  R D   ++EV+ A+ +  L   NS+LNP LY   N+  R   Q  +
Sbjct:    2 APNGTASSFCLDSTACK---------ITITVVLAVLILITVAGNVVVCLAVGLNRRLRNL-TNCFIVSLAITDLLLGLLVLPF--SAIYQLSCKWSFGKVFCNIYTSLDVMLCTASILNLFMISLDRYCAVMDPLRYPVLVTPVRVAISLVLIWVISITLSFLSIHLGWNSRNETSKGNHTTSKCKVQV--NEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHISSWKAATI----REHKATVTLAAVMGAFIICWFP--------YFTAFVYRGLRGD-DAINEVLEAIVLW-LGYANSALNPILYAALNRDFRTGYQQLF 303

The following BLAST results are available for this feature:

BLAST of TCONS_00056553-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056553-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HRH2	2.040e-27	27.88	Histamine H2 receptor OS=Homo sapiens GN=HRH2 PE=2...	[more]

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TCONS_00056553-protein (polypeptide) - C. hemisphaerica