Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00056553-protein ID=TCONS_00056553-protein|Name=TCONS_00056553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp MSLVFILVLIAAIQNHAEIIEPQNKKTFERKINTTPSYGVPYAYKINTTS SDDAPNSNKSNVILNGGPCQRKPPSAKDSVFITIFSLIFIVGVTGNIVAI VIIVLSKRLNSMPTNLFVVALAVCDIGAITFVIPIRIDNLFHSHNFCFNA HVCRMFTFTELLFHSASISHLFVIAIERFVAVNYPFVYQRVMNRTFTIML SLYTWCYALVWACLSQFNWEDPSNRSTWFYEDSRTKLCLVRNRIYFNVSL IMVYILPLAVMGGLYLSILRVALKQARIIESLSVHRDQSVKKQRREVRAT KTLAIIYGAFTVCWLPVSLISLTVQWVPHKYREFRTDFPKLSEVIFALFI EVLPTLNSSLNPFLYLFFNKKVRQEMQSYYERFRNISPTFQMDSDSSIGQ VAIRSKYLGDNSKLSTNFESNSNHNQSTTKPTEEQNRQNIDELNPGRTSS VRL Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0007186 G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
Term Definition
GO:0004930 G-protein coupled receptor activity
Vocabulary: Cellular Component
Term Definition
GO:0016021 integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0007186
G-protein coupled receptor signaling pathway
cellular_component
GO:0016021
integral component of membrane
molecular_function
GO:0004930
G-protein coupled receptor activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 Score = 23.53 Score = 28.46 Score = 28.88 Score = 24.66 Score = 31.5 Score = 30.48 Expect = 1.3E-39 / Score = 136.0 Score = Expect = 2.2E-66 / Score = 223.5 Score = Score = Score = 36.962 Sequence PR00237 PF00001 PS00237 G3DSA:1.20.1070.10 mobidb-lite SSF81321 PS50262
IPR Term IPR Description Source Source Term Source Description Alignment
IPR000276 G protein-coupled receptor, rhodopsin-like PRINTS PR00237 GPCRRHODOPSN coord: 347..373 score: 30.48 coord: 114..135 score: 28.46 coord: 160..182 score: 28.88 coord: 299..323 score: 31.5 coord: 246..269 score: 24.66 coord: 80..104 score: 23.53
IPR000276 G protein-coupled receptor, rhodopsin-like PFAM PF00001 7tm_1 coord: 95..365 e-value: 1.3E-39 score: 136.0
IPR000276 G protein-coupled receptor, rhodopsin-like PROSITE PS00237 G_PROTEIN_RECEP_F1_1 coord: 166..182
None No IPR available GENE3D 1.20.1070.10 coord: 45..445 e-value: 2.2E-66 score: 223.5
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 414..453
None No IPR available SUPERFAMILY 81321 Family A G protein-coupled receptor-like coord: 74..388
IPR017452 GPCR, rhodopsin-like, 7TM PROSITE PS50262 G_PROTEIN_RECEP_F1_2 coord: 95..365 score: 36.962
Blast
BLAST of TCONS_00056553-protein vs. Swiss-Prot (Human)
Match:
HRH2 (Histamine H2 receptor OS=Homo sapiens GN=HRH2 PE=2 SV=1)
HSP 1 Score: 112.079 bits (279), Expect = 2.040e-27
Identity = 92/330 (27.88%), Postives = 164/330 (49.70%), Query Frame = 0
Query: 54 APNSNKSNVILNGGPCQRKPPSAKDSVFITI-FSLIFIVGVTGNIVAIVIIVLSKRLNSMPTNLFVVALAVCDIGAITFVIPIRIDNLFH-SHNFCFNAHVCRMFTFTELLFHSASISHLFVIAIERFVAVNYPFVYQRVMNRTFTIMLSLYTWCYALVWACLS-QFNWEDPSNRSTWFYEDSRTKLCLVRNRIYFNVSLIMVYILPLAVMGGLYLSILRVALKQARIIESLSVHRDQSVKKQRREVRATKTLAIIYGAFTVCWLPVSLISLTVQWVPHKYREFRTDFPKLSEVIFALFIEVLPTLNSSLNPFLYLFFNKKVRQEMQSYY 380
APN S+ L+ C+ + IT+ +++ ++ V GN+V + + L++RL ++ TN F+V+LA+ D+ V+P ++ S + F C ++T +++ +ASI +LF+I+++R+ AV P Y ++ + + W ++ + LS W + S + S+ K+ + N +Y V ++ + LPL +M Y I +VA QA+ I +S + ++ RE +AT TLA + GAF +CW P + YR R D ++EV+ A+ + L NS+LNP LY N+ R Q +
Sbjct: 2 APNGTASSFCLDSTACK---------ITITVVLAVLILITVAGNVVVCLAVGLNRRLRNL-TNCFIVSLAITDLLLGLLVLPF--SAIYQLSCKWSFGKVFCNIYTSLDVMLCTASILNLFMISLDRYCAVMDPLRYPVLVTPVRVAISLVLIWVISITLSFLSIHLGWNSRNETSKGNHTTSKCKVQV--NEVYGLVDGLVTFYLPLLIMCITYYRIFKVARDQAKRINHISSWKAATI----REHKATVTLAAVMGAFIICWFP--------YFTAFVYRGLRGD-DAINEVLEAIVLW-LGYANSALNPILYAALNRDFRTGYQQLF 303
The following BLAST results are available for this feature:
BLAST of TCONS_00056553-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M S L V F I L V L I A A I Q N H A E I I E P Q N K K T F E R K I N T T P S Y G V P Y A Y K I N T T S S D D A P N S N K S N V I L N G G P C Q R K P P S A K D S V F I T I F S L I F I V G V T G N I V A I V I I V L S K R L N S M P T N L F V V A L A V C D I G A I T F V I P I R I D N L F H S H N F C F N A H V C R M F T F T E L L F H S A S I S H L F V I A I E R F V A V N Y P F V Y Q R V M N R T F T I M L S L Y T W C Y A L V W A C L S Q F N W E D P S N R S T W F Y E D S R T K L C L V R N R I Y F N V S L I M V Y I L P L A V M G G L Y L S I L R V A L K Q A R I I E S L S V H R D Q S V K K Q R R E V R A T K T L A I I Y G A F T V C W L P V S L I S L T V Q W V P H K Y R E F R T D F P K L S E V I F A L F I E V L P T L N S S L N P F L Y L F F N K K V R Q E M Q S Y Y E R F R N I S P T F Q M D S D S S I G Q V A I R S K Y L G D N S K L S T N F E S N S N H N Q S T T K P T E E Q N R Q N I D E L N P G R T S S V R L 50 100 150 200 250 300 350 400 450 Expect = 2.04e-27 / Id = 27.88 Sequence HRH2
Match Name E-value Identity Description
HRH2 2.040e-27 27.88 Histamine H2 receptor OS=Homo sapiens GN=HRH2 PE=2... [more]
back to top