TCONS_00056859-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056859-protein
Unique NameTCONS_00056859-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1005

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056859-protein ID=TCONS_00056859-protein|Name=TCONS_00056859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1005bp
VNKYSKRNQKFQIMDSFSDDEGPPPMETKYAARISENDKDKLLASGDERE
EYTDIFEAPVTNGYGSSIVNNVDFEDGESISASDEEVTGYTGDVEVYTES
EIDQKPQPSVVEGNLISIQDGDDCDVNDETIRKSSTSSHEKSDSMTKSVT
NESISEIADRLAEAELVTETPKDVLVPGSAVKVVVDSTGGYSSSGETSQK
DRQTALNDSRHKKFRKHTSSFTTENNQEVLTSSGEFQQPAIHEEQKRRHK
KKTTPSKQDAPLPREEKLIEVETPPTTPHHATEDLSVETEKPKSKLPTRT
IPIPGFKPLPEKPKPSEKKTGSSGSQKKRKRTRHKVYLDDPDVHQLISDH
VMLLQKYLEDVATGRTQKRDLKPVSSAPPPVMPKESPQLQSKIKMPIAGA
ANINNTTPQHQNYHQPSLPHHHGTNHHPNQNSTYGGGSQFPHGANPIPHG
GSQVHHGGSRHQYPPGSDLNPYQNSPYSSHHQHGGHHGGRGKDIIARIQH
NDPDMSTSSEDDDSYGKQGIAGGKGYQKLNTGAPSHPSYHNQGGAGGGGG
GHPHEMCPECGDYHPDTSNVREMDDMCPDCGVQHNPYEHGPTNAYQDPSD
EARPEALPSVEGPHTENDLNSGVRYKMKYLGSCQITTQHPVTKETRMQQA
QDAYKRIKNEGDDDDEDDDDVSTNVDMFISLERIKIINKDTKFEDVMMDH
ALRTVCFICDMGKILVLMARRLTSDGVTDFNIEQGQPITLGNITGGREKK
TSKNICHVFEAEIEASQIAKAIGQAFNMAYRQFLTTNGISHDHVEEAEYG
NVLESQKLVGQDLDRLTDNSQARDIVVQKRRGDPLGIMLLESGWGSMLPT
VFIAHLANYSAAARSQRLTVGDHILTCNGASFVGLPLSECNEILRNTRST
ERVIFRVVSCPPVVDVVVSRPDTKYQLGFSVQNGTICSLLRGGIAERGGV
RVGHRIIEINGDSVVAKSHQYIVDILANTIGSISMKTMPVAMYRLMVGDD
QPLHV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035820XLOC_035820Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056859TCONS_00056859Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR006020PTB/PI_dom
IPR011993PH_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 833..911
e-value: 1.2E-5
score: 34.8
coord: 925..991
e-value: 1.6E-10
score: 51.0
IPR001478PDZ domainPFAMPF00595PDZcoord: 918..986
e-value: 6.6E-8
score: 32.7
IPR001478PDZ domainPROSITEPS50106PDZcoord: 824..897
score: 12.245
IPR001478PDZ domainPROSITEPS50106PDZcoord: 915..991
score: 14.496
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 814..922
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 916..988
IPR006020PTB/PI domainSMARTSM00462PTB_9coord: 620..789
e-value: 1.1E-20
score: 84.8
IPR006020PTB/PI domainPFAMPF00640PIDcoord: 625..785
e-value: 1.1E-28
score: 100.0
IPR006020PTB/PI domainPROSITEPS01179PIDcoord: 622..784
score: 19.523
NoneNo IPR availableGENE3D2.30.42.10coord: 914..991
e-value: 2.1E-10
score: 40.2
NoneNo IPR availableGENE3D2.30.42.10coord: 818..913
e-value: 8.1E-12
score: 44.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 402..551
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 364..390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 588..620
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..335
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 823..908
e-value: 4.56694E-10
score: 56.8063
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 913..986
e-value: 9.80031E-14
score: 67.2066
IPR011993PH domain-likeGENE3D2.30.29.30coord: 616..791
e-value: 7.8E-32
score: 109.6
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 617..784

Blast
[Close]
BLAST of TCONS_00056859-protein vs. Swiss-Prot (Human)
Match: APBA2 (Amyloid-beta A4 precursor protein-binding family A member 2 OS=Homo sapiens GN=APBA2 PE=1 SV=3)

HSP 1 Score: 389.423 bits (999), Expect = 9.211e-122
Identity = 190/405 (46.91%), Postives = 274/405 (67.65%), Query Frame = 0 
Query:  609 SVEGPHTENDLNSGVRYKMKYLGSCQITTQHPVTKETRMQQAQDAYKRIKN-------EGDDDDEDDDDVSTNVDMFISLERIKIINKDTKFEDVMMDHALRTVCFICDMGKILVLMARRLTSDGVTDFNIEQGQPITLGNITGGRE-KKTSKNICHVFEAEIEASQIAKAIGQAFNMAYRQFLTTNGISHDHVEEAEYGNVLESQKLVGQDLDRLTDNSQARDIVVQKRRGDPLGIMLLESGWGSMLPTVFIAHLANYSAAARSQRLTVGDHILTCNGASFVGLPLSECNEILRNTRSTERVIFRVVSCPPVVDVVVSRPDTKYQLGFSVQNGTICSLLRGGIAERGGVRVGHRIIEINGDSVVAKSHQYIVDILANTIGSISMKTMPVAMYRLMVGDDQPLHV 1005
            +V GP    DL  G+ +   YLGS Q+ ++   +K  RM QAQ+A  R+K        +   + E D    T VD+FIS +RIK++N DT+  + MMDHALRT+ +I D+G I+VLMARR      +   IE           G +E KK  K ICHVFE+E +A  IA++IGQAF++AY++FL  NGI+ + + + EY +++ +Q++   DL   +++   +++ ++K +G+ LG++++ESGWGS+LPTV +A++ N   AARS +L++GD I++ NG S VGLPL+ C  I++  ++  +V   +VSCPPV  V++ RPD KYQLGFSVQNG ICSL+RGGIAERGGVRVGHRIIEING SVVA +H+ IV  L+N++G I MKTMP AM+RL+ G + PL++
Sbjct:  356 AVPGPCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQTLTEVDLFISTQRIKVLNADTQ--ETMMDHALRTISYIADIGNIVVLMARRRMPRSASQDCIE--------TTPGAQEGKKQYKMICHVFESE-DAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPAAMFRLLTGQETPLYI 749
The following BLAST results are available for this feature:
BLAST of TCONS_00056859-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APBA29.211e-12246.91Amyloid-beta A4 precursor protein-binding family A... [more]
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