TCONS_00056867-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056867-protein
Unique NameTCONS_00056867-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length952

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056867-protein ID=TCONS_00056867-protein|Name=TCONS_00056867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=952bp
LNFAAMNFDVLESVYQTFRTSNSAGDLLATFLNGEFERHFENSDEVVKNF
VNDTLPCMINITCIYINETMRAVTQSLWTNCLESDVKDFYCGVDNLEATM
RLIFVSLALVLLILLTLGKSRKSFKLGCCFGRPAPVVPLNMLDNYENRYA
YMFAFGVTVNSCVDVLFGDYKGIVGESSASELNALPPYFSIIIKVALAAF
ICIIAYPFFIAHNLRNRLLGSLIGFCYTAFYIAQLISKHQKLANKCWPIF
VRVNQTKRRYIFIFEDIPRFCCLFALLYLFGDTFVRILYKRWKKPRTSGI
GLLFNDERDDWKKGYHYIHVKDVFRKHIVAREKEKLENVLSDGPPIQTKI
LNFIKSRAYEVKPGFQYSTRIMIATFIGILAVYLILVQLVSYGYIIFTKT
WNQILDKERIIWLAKNLELPVPLIQKHVDGLQACWWLAMLWATVLQVLTV
LNSLVWYRRHVLMLRRGDRSFLPSSIKKGSLNAGDLMTASFKYAGFQVGY
SAWGYLIKHAVFWLIFSFLSVFFFVPLFYGGPSFLITLIKGYWPSVIVAV
IAVVVQNGLARGCFLLSKENVSVDNRRGFHITSYVLFYFNVFIGIASCLL
RLAYGAILGVVMLSRLQKSTLPRSYERRDPGFLAYLGFLMVEHQHSNPVL
HCFVRILLGHIDKSLQQDEFTVVRRETKVLLKTYGSADNAEWGANGCPLS
LNKSPQRTAQDVSRSAQIRWHLAVVLIQNPSIRRYRGHYIRRHIPVKHLT
RALFMQFNAGKELEGESNVDIDNVRAAAIGYQYRTDLYNSESPELTTSEK
FKQWLQFEKFCKHHSNETSDDVEPEESLPDTLKYKANENFRKFLQFMKFR
ERSTSNVSSNSSTTREQKVESLDVKKMIKSVTEVSFIDDNDEKMETNAES
ADSPNVVHVSPRREKGEQRNTCELNIKMEEVHINEGVVETDKKTLNKLDA
WV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035825XLOC_035825Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056867TCONS_00056867Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14752RBP_receptorcoord: 103..736
e-value: 5.7E-95
score: 319.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 895..917

Blast
[Close]
BLAST of TCONS_00056867-protein vs. Swiss-Prot (Human)
Match: STRA6 (Stimulated by retinoic acid gene 6 protein homolog OS=Homo sapiens GN=STRA6 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.885e-20
Identity = 93/400 (23.25%), Postives = 176/400 (44.00%), Query Frame = 0 
Query:  359 YEVKPGFQYSTRIMIATFIGILAVY----------LILVQLVSYGYIIFTKTWNQILDKERIIWLAKNLELPVPLIQKHVDGLQACWWLAMLWATVLQVLTVLNSLVWYRRHVLMLRRGDRSFLPSSIKKGSLNAGDLMTASFKYAGFQVGYSAWGYLIKHAVFWLIFSFLSVFFFVPLFYGGPSFLITLIKGYWPSVIVAVIAVVVQNGLARGCFLLSKE-NVSVDNRRGFHITSYVLFYFNVFIGIASCLLRLAYGAILGVVMLSRLQKSTLPRSYERRDPGFLAYLGFLMVEHQHSNPVLHCFVRIL----------LGHIDKSLQQDEFTVVRRETKVLLKTYGS-ADNAEWGANGCPLSLNKSPQRTAQDVSRSAQIRWHLAVVLIQNPSIRRYR 736
            Y  +PGF    +++++  +   A+Y          +  +Q V  G    T   + +L    I+ L+++ +  V L++ H+  L+ C+  A++ + +L  L ++ SLV +R ++  L RG    L S + +    +   +     ++ +Q  +   G L++  +F+L  + L+    +P+ +G    L   ++  WP  +   +AV++QN  A   FL + + +  + NRR  +  +++LF  NV +G      R+   A+   + L ++  S LP      DPG+  Y  FL +E   S+P +  F  +L          +     SL+  E      E   LL+T  S A  A  GA+                     + RW LA  L+ NP+++ +R
Sbjct:  284 YTPQPGFHLPLKLVLSATLTGTAIYQVALLLLVGVVPTIQKVRAG---VTTDVSYLLAGFGIV-LSEDKQEVVELVKHHLWALEVCYISALVLSCLLTFLVLMRSLVTHRTNLRALHRGAALDL-SPLHRSPHPSRQAIFCWMSFSAYQTAFICLGLLVQQIIFFLGTTALAFLVLMPVLHGRNLLLFRSLESSWPFWLTLALAVILQNMAAHWVFLETHDGHPQLTNRRVLYAATFLLFPLNVLVGAMVATWRVLLSALYNAIHLGQMDLSLLPPRAATLDPGYYTYRNFLKIEVSQSHPAMTAFCSLLLQAQSLLPRTMAAPQDSLRPGE----EDEGMQLLQTKDSMAKGARPGAS-------------------RGRARWGLAYTLLHNPTLQVFR 655
The following BLAST results are available for this feature:
BLAST of TCONS_00056867-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STRA61.885e-2023.25Stimulated by retinoic acid gene 6 protein homolog... [more]
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