TCONS_00056885-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056885-protein
Unique NameTCONS_00056885-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length148

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056885-protein ID=TCONS_00056885-protein|Name=TCONS_00056885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MCAKMKFKMAAIKTEPEEFEEPNLKRLHGLVDNTYDSDDEDIKEIKPKIE
KIDYSEKSRHCPYLDTINRTVLDFDFEKLCCVSLSHLNVYACLVCGKYFQ
GRGQNSHAYTHSVHIGHHVYLNLHTLKFYCLPDNYEIIDSSLEDIKVC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035838XLOC_035838Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056885TCONS_00056885Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001607Znf_UBP
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001607Zinc finger, UBP-typeSMARTSM00290Zf_UBP_1coord: 79..128
e-value: 4.3E-12
score: 56.2
IPR001607Zinc finger, UBP-typePFAMPF02148zf-UBPcoord: 82..141
e-value: 3.3E-13
score: 49.7
IPR001607Zinc finger, UBP-typePROSITEPS50271ZF_UBPcoord: 78..139
score: 17.791
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 46..140
e-value: 5.4E-13
score: 48.4
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 60..145

Blast
[Close]
BLAST of TCONS_00056885-protein vs. Swiss-Prot (Human)
Match: SNUT2 (U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sapiens GN=USP39 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 7.800e-55
Identity = 82/111 (73.87%), Postives = 93/111 (83.78%), Query Frame = 0 
Query:   36 DSDDEDIKEIKPKIEKIDYSEK-SRHCPYLDTINRTVLDFDFEKLCCVSLSHLNVYACLVCGKYFQGRGQNSHAYTHSVHIGHHVYLNLHTLKFYCLPDNYEIIDSSLEDI 145
            D D E  +E++ K  ++D  ++ SRHCPYLDTINR+VLDFDFEKLC +SLSH+N YACLVCGKYFQGRG  SHAY HSV   HHV+LNLHTLKFYCLPDNYEIIDSSLEDI
Sbjct:   79 DEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDI 189
The following BLAST results are available for this feature:
BLAST of TCONS_00056885-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNUT27.800e-5573.87U4/U6.U5 tri-snRNP-associated protein 2 OS=Homo sa... [more]
back to top