TCONS_00057221-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057221-protein
Unique Name	TCONS_00057221-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	636

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057221-protein ID=TCONS_00057221-protein|Name=TCONS_00057221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=636bp
MDQPQVTYRYPLIRYFSLFAIALVIDMLLSIFLWIGKPDKTEIMHTIKHY
SIDKSVFDLACISVGRCILLIPILARLETKAIQNTQQGGGSRSGSQKILK
FLSFILILGSIVFAIYKGVKVILSFEDGKEKDFKTTDYALCISFAIFSLL
FSVTLLGYFQHLKRLACHYAQFGDDAEMGSDECADKNEPKKKVNVARLIS
LLKPESLKIFVGTLGLIGSTVSNMLAPLWFGKVIQAAATGTMHDLNKQTL
ILFLIYAVGGFAAFFRAWLYTLAGQSLVARIRKLLFAQIIAQEVAFFDTS
RTGELMNRLSSDCQVLQNALSVNISMLLRYTLQIFGSIGIMFYVSPKLGG
VLLAVIPLVGILAQRYGAYVRDVQKTFQDELAKSASSAEETISAVRTVRS
FSQEPKARAEYDLAIDSSFNAGAKLAFASGIFNAVIAVLTTGAIVLVLWY
GGKLVHDGSMNVGNLTSFILYALNVAMAFAFLSSLYGDFMKAVGASIRIF
ELLDRSPELVPGTIQMNDAKVSMSFEDVYFTYPARPDNQILKGFSFEMNP
GETIALVGPSGGGKSTVINLLERFYDPAQGLVKLGEHPMFDIDTDWFRKR
VGIVSQEPVLFAKTIAENIAYGRDATKEEVGFVFLC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036048	XLOC_036048	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057221	TCONS_00057221	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003439	ABC_transporter-like
IPR011527	ABC1_TM_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0016887	ATPase activity
GO:0005524	ATP binding
GO:0042626	ATPase activity, coupled to transmembrane movement of substances

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 541..625 e-value: 2.4E-17 score: 63.6
IPR011527	ABC transporter type 1, transmembrane domain	PFAM	PF00664	ABC_membrane	coord: 210..473 e-value: 1.5E-60 score: 205.1
IPR011527	ABC transporter type 1, transmembrane domain	PROSITE	PS50929	ABC_TM1F	coord: 210..491 score: 56.065
IPR011527	ABC transporter type 1, transmembrane domain	SUPERFAMILY	90123	ABC transporter transmembrane region	coord: 197..508
None	No IPR available	GENE3D	1.20.1560.10		coord: 174..510 e-value: 4.1E-80 score: 268.6
None	No IPR available	GENE3D	3.40.50.300		coord: 520..631 e-value: 2.8E-27 score: 95.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 515..630

Blast

[Close]

BLAST of TCONS_00057221-protein vs. Swiss-Prot (Human)
Match: ABCBA (ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 1.000e-94
Identity = 188/448 (41.96%), Postives = 264/448 (58.93%), Query Frame = 0

Query:  197 RLISLLKPESLKIFVGTLGLIGSTVSNMLAPLWFGKVIQAAATGTMHD----LNKQTLILFLIYAVGGFAAFFRAWLYTLAGQSLVARIRKLLFAQIIAQEVAFFDTSRTGELMNRLSSDCQVLQNALSVNISMLLRYTLQIFGSIGIMFYVSPKLGGVLLAVIPLVGILAQRYGAYVRDVQKTFQDELAKSASSAEETISAVRTVRSFSQEPKARAEYDLAIDSSFNAGAKLAFA-SGIFNAVIAVLTTGAIVL-VLWYGGKLVHDGSMNVGNLTSFILYALNVAMAFAFLSSLYGDFMKAVGASIRIFELLDRSPELV--PGTIQMNDA--KVSMSFEDVYFTYPARPDNQILKGFSFEMNPGETIALVGPSGGGKSTVINLLERFYDPAQGLVKLGEHPMFDIDTDWFRKRVGIVSQEPVLFAKTIAENIAYGRD----ATKEEV 630
            +L+ L  PE  ++      L  S+V +M AP + GK+I    T    D    L +  L L  ++  G  A   R +L   +GQ +V R+R  LF+ I+ QEVAFFD +RTGEL+NRLSSD  +L  +++ N+S  LR   Q    I +MF+VSP L   +L+V+P V I+A  YG Y+R + K  QD LA++   AEE I  VRTVR+F +E     +Y   +D       K AFA +G F A    L+   IVL VL+ GG L+    M VG L+SF++YA  V ++   LSS Y + MK +GA  R++ELL+R P+L    G I +N+   + ++ F++V+F YPARP+  I + FS  +  G   ALVGPSG GKSTV++LL R YDPA G + L  H +  ++  W R ++G VSQEP+LF+ +IAENIAYG D     T EE+
Sbjct:  159 KLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEI 603

The following BLAST results are available for this feature:

BLAST of TCONS_00057221-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057221-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ABCBA	1.000e-94	41.96	ATP-binding cassette sub-family B member 10, mitoc...	[more]

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TCONS_00057221-protein (polypeptide) - C. hemisphaerica