Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00058682-protein ID=TCONS_00058682-protein|Name=TCONS_00058682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp FEKTIIYCRTIDKVTDVHRYFSVAFENEGAQLPFTVYHGKLTRKCREKAL SDFVARDGKTRVLIGTSAIGMGIDIPDIRTVLFYGVPSDIESLVQGIGRG GRDGELCECVLFVRPCDHNLAKEDKHLKNYIENTTMCRRKIMMLAFSHKP IGPAVKHLCCDICQSKCYCEVCEAPPSRKFTENVSVILPKRNVTPSQRAL VREMLNECNSLNGDQGVLSTASVTSIIPEHVITEITEKCEFIFEIEYIKC NFQLFDEETELLVLGVICDTFNDFEIPDDYFEKAKGICPTSLKTFDQLID LNADVQTA Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 Expect = 6.1E-17 / Score = 72.3 Expect = 2.4E-20 / Score = 72.9 Score = 17.953 Expect = 2.4E-31 / Score = 108.2 Expect = 1.09474E-21 / Score = 87.2932 Score = Sequence SM00490 PF00271 PS51194 G3DSA:3.40.50.300 cd00079 SSF52540
IPR Term IPR Description Source Source Term Source Description Alignment
IPR001650 Helicase, C-terminal SMART SM00490 helicmild6 coord: 21..104 e-value: 6.1E-17 score: 72.3
IPR001650 Helicase, C-terminal PFAM PF00271 Helicase_C coord: 2..103 e-value: 2.4E-20 score: 72.9
IPR001650 Helicase, C-terminal PROSITE PS51194 HELICASE_CTER coord: 1..152 score: 17.953
None No IPR available GENE3D 3.40.50.300 coord: 1..167 e-value: 2.4E-31 score: 108.2
None No IPR available CDD cd00079 HELICc coord: 1..112 e-value: 1.09474E-21 score: 87.2932
IPR027417 P-loop containing nucleoside triphosphate hydrolase SUPERFAMILY 52540 P-loop containing nucleoside triphosphate hydrolases coord: 2..127
Blast
BLAST of TCONS_00058682-protein vs. Swiss-Prot (Human)
Match:
WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)
HSP 1 Score: 82.0333 bits (201), Expect = 3.287e-17
Identity = 65/192 (33.85%), Postives = 88/192 (45.83%), Query Frame = 0
Query: 4 TIIYCRTIDKVTDVHRYFSVAFENEGAQLPFTVYHGKLTRKCREKALSDFVARDGKTRVLIGTSAIGMGIDIPDIRTVLFYGVPSDIESLVQGIGRGGRDGELCECVLFVRPCDHNLAKEDKHLKNYIEN-------------------TTMCRRKIMMLAFSHKPIGPAVKHL-----CCDICQSK---CY 168
TIIYC + K+T V E L YH ++ R+ FV RD + + +I T A GMGI+ DIR V+ YG P D+ES Q IGR GRDG C + P D NL ++HL I N ++ CRR+I++ F K + A + CCD C+S+ CY
Sbjct: 767 TIIYCPS-RKMTQ-----QVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFV-RD-EIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINL---NRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLDHCY 947
The following BLAST results are available for this feature:
BLAST of TCONS_00058682-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
F E K T I I Y C R T I D K V T D V H R Y F S V A F E N E G A Q L P F T V Y H G K L T R K C R E K A L S D F V A R D G K T R V L I G T S A I G M G I D I P D I R T V L F Y G V P S D I E S L V Q G I G R G G R D G E L C E C V L F V R P C D H N L A K E D K H L K N Y I E N T T M C R R K I M M L A F S H K P I G P A V K H L C C D I C Q S K C Y C E V C E A P P S R K F T E N V S V I L P K R N V T P S Q R A L V R E M L N E C N S L N G D Q G V L S T A S V T S I I P E H V I T E I T E K C E F I F E I E Y I K C N F Q L F D E E T E L L V L G V I C D T F N D F E I P D D Y F E K A K G I C P T S L K T F D Q L I D L N A D V Q T A 50 100 150 200 250 300 Expect = 3.29e-17 / Id = 33.85 Sequence WRN
Match Name E-value Identity Description
WRN 3.287e-17 33.85 Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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