TCONS_00058973-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058973-protein
Unique NameTCONS_00058973-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058973-protein ID=TCONS_00058973-protein|Name=TCONS_00058973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MEVDVGMDFFLCETLPTPEPQDGDLNMMQHLNPLELSVGDSNSQRPIKRK
KSGNMTDHVKRPMNAFMVWSQIERKKMAESYPDMHNAEISRRLGKQWKML
TDDDRRPYVIRSEKLREEHMRRHPDYKYRPKKKAKEMEGKQGAAAQTNQQ
RANNTKNNTNTLLAIEGNSYDSTMIKLGPSTTLAYNALNSKHLLKPIKQA
NTTNAANVPLQRIESAKLVNIKNGQCVMTTGKPFLTLSRQVGKIGSLSSS
EGNFSISPQKNSLLKTTSVASGQKMFRTPLTPPPNVPGSLASPVDLEPNL
SFYDDFSELFDAKKGRSNSSSSGEFQTAPTWIKTESCDSVGDLPISPLSD
ISTMVDFPDIYTTPEVSEMLSGQWLDSSFGLGV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037144XLOC_037144Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058973TCONS_00058973Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 58..128
e-value: 4.8E-26
score: 102.5
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 52..160
e-value: 9.6E-30
score: 102.5
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 59..127
e-value: 3.9E-24
score: 84.8
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 59..127
score: 21.296
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 46..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..57
NoneNo IPR availableCDDcd01388SOX-TCF_HMG-boxcoord: 58..129
e-value: 3.89453E-34
score: 120.866

Blast
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BLAST of TCONS_00058973-protein vs. Swiss-Prot (Human)
Match: SOX14 (Transcription factor SOX-14 OS=Homo sapiens GN=SOX14 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.744e-33
Identity = 47/82 (57.32%), Postives = 70/82 (85.37%), Query Frame = 0 
Query:   56 TDHVKRPMNAFMVWSQIERKKMAESYPDMHNAEISRRLGKQWKMLTDDDRRPYVIRSEKLREEHMRRHPDYKYRPKKKAKEM 137
            +DH+KRPMNAFMVWS+ +R+KMA+  P MHN+EIS+RLG +WK+L++ ++RPY+  +++LR +HM+ HPDYKYRP++K K +
Sbjct:    5 SDHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNL 86
The following BLAST results are available for this feature:
BLAST of TCONS_00058973-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX149.744e-3357.32Transcription factor SOX-14 OS=Homo sapiens GN=SOX... [more]
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