TCONS_00061859-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00061859-protein
Unique Name	TCONS_00061859-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	565

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00061859-protein ID=TCONS_00061859-protein|Name=TCONS_00061859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp
NISVVSRKQSDWFLSSQNREKSLNKVIMATCVKPSSTNTKEDSHQMSERL
QKLHNSNKDAFKFINEGLNLEDKGKIVNAIACYEKGLRILESGMKTSNSS
LTLFPGEAEIYMNLLSKLTKAQKEIIIRLETLKQEQKSSLEPSAPELPDN
TVNGHQEDLWQDAKELVNIKEGVKLFHVDDKGVVSPWTSTNVVLQIFQIL
KDSITDGPDAFLKCGEWMYPLEPGKSPVLKTQNTYMFPDVNIKDEVAIEG
DDLSHISCVGIVLSDLVSDPLRQRFERILKCYGDFRISDKPAESFQPKTK
PKRPPPPSTKRNAERTISPTSESTLAIVSTATKEISDQLAEQKAWSDKIS
VGINIGSQWISWGLLKGAEYTSVLMEKGATSLQQRIKPENKPTVIDPEIS
HNIRQLHQATGSVVQVSSFLVTSLGALTVNLGKKLAPIVAQQGEKLLPIK
YKPSNSESSQKTIEEVKKVGVAGLQGLSIMFLSLEQAGKNLYQTLSKATV
QTVQHKYGEEAGDVTHDAMGAAGNALKTVWNVNQLGPKAVAKRALKDTGK
AMLRMEDDKSVKKQQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038801	XLOC_038801	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00061859	TCONS_00061859	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009686	Senescence/spartin

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 115..135
None	No IPR available	GENE3D	1.20.58.280		coord: 45..141 e-value: 4.9E-6 score: 26.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..322
IPR009686	Senescence/spartin-associated	PFAM	PF06911	Senescence	coord: 355..539 e-value: 3.5E-45 score: 154.3

Blast

[Close]

BLAST of TCONS_00061859-protein vs. Swiss-Prot (Human)
Match: SPART (Spartin OS=Homo sapiens GN=SPART PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.690e-59
Identity = 146/440 (33.18%), Postives = 217/440 (49.32%), Query Frame = 0

Query:  157 EDLWQDAKELVNIKEGVKLFHVDDKGVVSPWTSTNVVLQIFQILK---DSITDGPDAFLKCGEWMYPLEPGKSPVLK-TQNTYMFPDVNIKDEVAIEGDDLSHISC-VGIVLSDLVSDPLRQRFERILKCYGDFRISDK--PAESFQPKTKPKRPPPPST------------------------KRNAERTISPTSESTLAIVSTATKEISDQLAEQKAWSDKISVGINIGSQWISWGLLKGAEYTSVLMEKGATSLQQRIKPENKPTVIDPEISHNIRQLHQATGSVVQVSSFLVTSLGALTVNLGKKLAPIVAQQGEKLLPIKYKPSNSESSQKTIEEVKKVGVAGLQGLSIMFLSLEQAGKNLYQTLSKATVQTVQHKYGEEAGDVTHDAMGAAGNALKTVWNVNQLGPKAVAKRALKDTGKAMLRMEDDKSVKKQQ 565
            E L  DA EL+ I  GV++F V+  G VS   S    L+I + L    D++ + P  FL+  +W+YPL P +SPVLK T   YMFPD             L    C VG+VLS  + +  R+ FE +L+   D R+      AE       P R  P S                         KR      + + E  L+ +        ++  E   WS+K++  I  G+ W+SWGL+KGAE T   ++KGA+ L++RI+PE KP  + P ++  +    QATG   +VS FLV  +  +   +GK+LAP V + G KL+P   K    +  +  ++    V  + +QG S ++  LE A K +   +S  TVQTV++KYG  AG+ TH A+ +A N   T +N+N +G KA+ K+    TG  +L  ED + V   Q
Sbjct:  212 ETLGLDADELILIPNGVQIFFVNPAGEVSA-PSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLYPLVPDRSPVLKCTAGAYMFPDTM-----------LQAAGCFVGVVLSSELPEDDRELFEDLLRQMSDLRLQANWNRAEEENEFQIPGRTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRAKDTSSEEVNLSHIVPCEPVPEEKPKELPEWSEKVAHNILSGASWVSWGLVKGAEITGKAIQKGASKLRERIQPEEKPVEVSPAVTKGLYIAKQATGGAAKVSQFLVDGVCTVANCVGKELAPHVKKHGSKLVPESLK--KDKDGKSPLDGAMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGYNAGEATHHAVDSAVNVGVTAYNINNIGIKAMVKKTATQTGHTLL--EDYQIVDNSQ 635

The following BLAST results are available for this feature:

BLAST of TCONS_00061859-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00061859-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SPART	5.690e-59	33.18	Spartin OS=Homo sapiens GN=SPART PE=1 SV=1	[more]

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TCONS_00061859-protein (polypeptide) - C. hemisphaerica