TCONS_00062181-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062181-protein
Unique Name	TCONS_00062181-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	659

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062181-protein ID=TCONS_00062181-protein|Name=TCONS_00062181-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp
TLGFMKMLILQIFAEFCQCNNKMAKGKHEGENPAPRKTIFVRNLPFTTTN
KELEELFSNDAPVKQAFVVKDKDNRTKCRGFGYVQFVVQEDADKAVATSK
TVANRKLLICYANKKPKHEKRKKEQAAAAEKEGGEKDDVNEKEEETDTKK
QTVDQQKEKSTKDKKKPKEVEKAKGSQNTEKAQNDEKEVKKNEKPTEKYT
KPSVTDSKTELQRTIVLTGLTDKVKRKAFRVLCESFGEVENIVFPVPERT
QVTAFVRFKDYKATIRALQKIPGKKVKKSHSLSAVLLTKEGKFPKKKTLD
KSRLIVRNLSFKVELDELKECFSKFGKVLDVNIPTKTVNNKEVKIGCGFV
QFENPSQGLAALEAMNMKEINGRAVIVDWAVKKDAYEKDKDSKAINDEPK
QEKTDKKGKKVKEEEMSEDEDADDVEEEEEKDEEDAEDLSDEEADDDELS
VDEEVEEEEASENEDSGVEKDEPMSEDEEGSDIDEEDELEEMSEDEGEEE
SDEDDEEDEAKQARIKEKMRDAKEGKTVFIRNMSYNTDDEGLMEEFEKFG
EIDYCKIVMDRETGHSKGCAFLKFKEKDAADECIKEMEKLQDQQKNLVVD
GRSIVVSKAVTKGKMGELERQKAAEKQETDKRXWESWSDRKLQKNRRRTR
EICTWLMKA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038987	XLOC_038987	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062181	TCONS_00062181	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003954	RRM_dom_euk
IPR000504	RRM_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 580..600
None	No IPR available	COILS	Coil	Coil	coord: 139..159
None	No IPR available	COILS	Coil	Coil	coord: 422..442
None	No IPR available	GENE3D	3.30.70.330		coord: 287..393 e-value: 1.9E-22 score: 78.8
None	No IPR available	GENE3D	3.30.70.330		coord: 450..627 e-value: 2.4E-26 score: 91.9 coord: 130..285 e-value: 2.7E-12 score: 46.2
None	No IPR available	GENE3D	3.30.70.330		coord: 21..128 e-value: 1.7E-21 score: 75.8
None	No IPR available	CDD	cd00590	RRM_SF	coord: 215..277 e-value: 2.56324E-5 score: 41.5217
None	No IPR available	CDD	cd12415	RRM3_RBM28_like	coord: 526..609 e-value: 2.56813E-27 score: 105.371
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 527..607 e-value: 0.029 score: 23.5 coord: 303..378 e-value: 5.7 score: 6.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 527..607 e-value: 5.0E-22 score: 89.2 coord: 38..110 e-value: 3.6E-17 score: 73.1 coord: 214..285 e-value: 3.5E-4 score: 29.9 coord: 303..378 e-value: 5.5E-17 score: 72.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 304..375 e-value: 8.0E-15 score: 54.3 coord: 39..107 e-value: 2.6E-15 score: 55.9 coord: 215..278 e-value: 2.6E-6 score: 27.0 coord: 528..596 e-value: 7.1E-16 score: 57.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 213..289 score: 9.166
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 526..611 score: 16.466
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 37..114 score: 15.63
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 302..382 score: 15.716
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 523..617
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 213..385
IPR000504	RNA recognition motif domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 30..122

Blast

[Close]

BLAST of TCONS_00062181-protein vs. Swiss-Prot (Human)
Match: RBM28 (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 1.517e-43
Identity = 128/333 (38.44%), Postives = 194/333 (58.26%), Query Frame = 0

Query:  303 RLIVRNLSFKVELDELKECFSKFGKVLDVNIPTKTVNNKEVKIGCGFVQFENPSQGLAALEAMNMKEINGRAVIVDWAVKKDAYEKDKDSKAINDEP-----KQEKTDKKGKKVKEEEMSEDEDADDVEEEEEKDEEDAEDLSDEEADDDELSVDEEVEEEEASENEDSGVEKDEPMSEDEEGSDIDEEDELEEMSEDEGEE--ESDEDDEEDEAKQARIKEKMR-----DAKEGKTVFIRNMSYNTDDEGLMEEFEKFGEIDYCKIVMDRETGHSKGCAFLKFKEKDAADECIKEMEKLQDQQKNLVVDGRSIVVSKAVTKGKMGELERQKA 623
            RLI+RNLSFK   D+LK  F++FG VL+VNIP K         G GFVQF+N  +   AL+ MNMKEI GR V VDWAV KD Y+  +   AI +E       QE   KKG++ ++ E  E++D DD ++EE+   +D +    EE ++ E  V + V+ ++ +    +  +  +     EE SD++E D +     D+GEE  +SD   EE E K  ++  K +     D  EGKTVFIRN+S+++++E L E  ++FGE+ Y +IV+  +T HSKGCAF +F  ++AA +C+      +++   L +DGR + V  AVT+ +  +L+  K 
Sbjct:  115 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMR---GFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEENDDDDDDDDEEDGVFDDED----EEEENIESKVTKPVQIQKRAVKRPAPAKSSD---HSEEDSDLEESDSI-----DDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASP-ENEAGGLKLDGRQLKVDLAVTRDEAAKLQTTKV 431

The following BLAST results are available for this feature:

BLAST of TCONS_00062181-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062181-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RBM28	1.517e-43	38.44	RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE...	[more]

You are here

TCONS_00062181-protein (polypeptide) - C. hemisphaerica