TCONS_00062181-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062181-protein
Unique NameTCONS_00062181-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062181-protein ID=TCONS_00062181-protein|Name=TCONS_00062181-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp
TLGFMKMLILQIFAEFCQCNNKMAKGKHEGENPAPRKTIFVRNLPFTTTN
KELEELFSNDAPVKQAFVVKDKDNRTKCRGFGYVQFVVQEDADKAVATSK
TVANRKLLICYANKKPKHEKRKKEQAAAAEKEGGEKDDVNEKEEETDTKK
QTVDQQKEKSTKDKKKPKEVEKAKGSQNTEKAQNDEKEVKKNEKPTEKYT
KPSVTDSKTELQRTIVLTGLTDKVKRKAFRVLCESFGEVENIVFPVPERT
QVTAFVRFKDYKATIRALQKIPGKKVKKSHSLSAVLLTKEGKFPKKKTLD
KSRLIVRNLSFKVELDELKECFSKFGKVLDVNIPTKTVNNKEVKIGCGFV
QFENPSQGLAALEAMNMKEINGRAVIVDWAVKKDAYEKDKDSKAINDEPK
QEKTDKKGKKVKEEEMSEDEDADDVEEEEEKDEEDAEDLSDEEADDDELS
VDEEVEEEEASENEDSGVEKDEPMSEDEEGSDIDEEDELEEMSEDEGEEE
SDEDDEEDEAKQARIKEKMRDAKEGKTVFIRNMSYNTDDEGLMEEFEKFG
EIDYCKIVMDRETGHSKGCAFLKFKEKDAADECIKEMEKLQDQQKNLVVD
GRSIVVSKAVTKGKMGELERQKAAEKQETDKRXWESWSDRKLQKNRRRTR
EICTWLMKA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038987XLOC_038987Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062181TCONS_00062181Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003954RRM_dom_euk
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600650Expect = 2.4E-26 / Score = 91.9Score = 9.166Score = 16.466Score = 15.63Score = 15.716Score = Score = Score = SequenceCoilCoilCoilG3DSA:3.30.70.330G3DSA:3.30.70.330G3DSA:3.30.70.330cd00590cd12415SM00361SM00360PF00076PS50102PS50102PS50102PS50102SSF54928SSF54928SSF54928
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 580..600
NoneNo IPR availableCOILSCoilCoilcoord: 139..159
NoneNo IPR availableCOILSCoilCoilcoord: 422..442
NoneNo IPR availableGENE3D3.30.70.330coord: 287..393
e-value: 1.9E-22
score: 78.8
NoneNo IPR availableGENE3D3.30.70.330coord: 450..627
e-value: 2.4E-26
score: 91.9
coord: 130..285
e-value: 2.7E-12
score: 46.2
NoneNo IPR availableGENE3D3.30.70.330coord: 21..128
e-value: 1.7E-21
score: 75.8
NoneNo IPR availableCDDcd00590RRM_SFcoord: 215..277
e-value: 2.56324E-5
score: 41.5217
NoneNo IPR availableCDDcd12415RRM3_RBM28_likecoord: 526..609
e-value: 2.56813E-27
score: 105.371
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 527..607
e-value: 0.029
score: 23.5
coord: 303..378
e-value: 5.7
score: 6.4
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 527..607
e-value: 5.0E-22
score: 89.2
coord: 38..110
e-value: 3.6E-17
score: 73.1
coord: 214..285
e-value: 3.5E-4
score: 29.9
coord: 303..378
e-value: 5.5E-17
score: 72.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 304..375
e-value: 8.0E-15
score: 54.3
coord: 39..107
e-value: 2.6E-15
score: 55.9
coord: 215..278
e-value: 2.6E-6
score: 27.0
coord: 528..596
e-value: 7.1E-16
score: 57.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 213..289
score: 9.166
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 526..611
score: 16.466
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 37..114
score: 15.63
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 302..382
score: 15.716
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 523..617
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 213..385
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 30..122

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062181-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600650Expect = 1.52e-43 / Id = 38.44SequenceRBM28
Match NameE-valueIdentityDescription
RBM281.517e-4338.44RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE... [more]
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