Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00062181-protein ID=TCONS_00062181-protein|Name=TCONS_00062181-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp TLGFMKMLILQIFAEFCQCNNKMAKGKHEGENPAPRKTIFVRNLPFTTTN KELEELFSNDAPVKQAFVVKDKDNRTKCRGFGYVQFVVQEDADKAVATSK TVANRKLLICYANKKPKHEKRKKEQAAAAEKEGGEKDDVNEKEEETDTKK QTVDQQKEKSTKDKKKPKEVEKAKGSQNTEKAQNDEKEVKKNEKPTEKYT KPSVTDSKTELQRTIVLTGLTDKVKRKAFRVLCESFGEVENIVFPVPERT QVTAFVRFKDYKATIRALQKIPGKKVKKSHSLSAVLLTKEGKFPKKKTLD KSRLIVRNLSFKVELDELKECFSKFGKVLDVNIPTKTVNNKEVKIGCGFV QFENPSQGLAALEAMNMKEINGRAVIVDWAVKKDAYEKDKDSKAINDEPK QEKTDKKGKKVKEEEMSEDEDADDVEEEEEKDEEDAEDLSDEEADDDELS VDEEVEEEEASENEDSGVEKDEPMSEDEEGSDIDEEDELEEMSEDEGEEE SDEDDEEDEAKQARIKEKMRDAKEGKTVFIRNMSYNTDDEGLMEEFEKFG EIDYCKIVMDRETGHSKGCAFLKFKEKDAADECIKEMEKLQDQQKNLVVD GRSIVVSKAVTKGKMGELERQKAAEKQETDKRXWESWSDRKLQKNRRRTR EICTWLMKA Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term Definition
GO:0003676 nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676
nucleic acid binding
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 400 450 500 550 600 650 Score = Score = Score = Expect = 1.9E-22 / Score = 78.8 Expect = 2.7E-12 / Score = 46.2 Expect = 2.4E-26 / Score = 91.9 Expect = 1.7E-21 / Score = 75.8 Expect = 2.56324E-5 / Score = 41.5217 Expect = 2.56813E-27 / Score = 105.371 Expect = 5.7 / Score = 6.4 Expect = 0.029 / Score = 23.5 Expect = 3.6E-17 / Score = 73.1 Expect = 3.5E-4 / Score = 29.9 Expect = 5.5E-17 / Score = 72.4 Expect = 5.0E-22 / Score = 89.2 Expect = 2.6E-15 / Score = 55.9 Expect = 2.6E-6 / Score = 27.0 Expect = 8.0E-15 / Score = 54.3 Expect = 7.1E-16 / Score = 57.7 Score = 9.166 Score = 16.466 Score = 15.63 Score = 15.716 Score = Score = Score = Sequence Coil Coil Coil G3DSA:3.30.70.330 G3DSA:3.30.70.330 G3DSA:3.30.70.330 cd00590 cd12415 SM00361 SM00360 PF00076 PS50102 PS50102 PS50102 PS50102 SSF54928 SSF54928 SSF54928
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 580..600
None No IPR available COILS Coil Coil coord: 139..159
None No IPR available COILS Coil Coil coord: 422..442
None No IPR available GENE3D 3.30.70.330 coord: 287..393 e-value: 1.9E-22 score: 78.8
None No IPR available GENE3D 3.30.70.330 coord: 450..627 e-value: 2.4E-26 score: 91.9 coord: 130..285 e-value: 2.7E-12 score: 46.2
None No IPR available GENE3D 3.30.70.330 coord: 21..128 e-value: 1.7E-21 score: 75.8
None No IPR available CDD cd00590 RRM_SF coord: 215..277 e-value: 2.56324E-5 score: 41.5217
None No IPR available CDD cd12415 RRM3_RBM28_like coord: 526..609 e-value: 2.56813E-27 score: 105.371
IPR003954 RNA recognition motif domain, eukaryote SMART SM00361 rrm2_1 coord: 527..607 e-value: 0.029 score: 23.5 coord: 303..378 e-value: 5.7 score: 6.4
IPR000504 RNA recognition motif domain SMART SM00360 rrm1_1 coord: 527..607 e-value: 5.0E-22 score: 89.2 coord: 38..110 e-value: 3.6E-17 score: 73.1 coord: 214..285 e-value: 3.5E-4 score: 29.9 coord: 303..378 e-value: 5.5E-17 score: 72.4
IPR000504 RNA recognition motif domain PFAM PF00076 RRM_1 coord: 304..375 e-value: 8.0E-15 score: 54.3 coord: 39..107 e-value: 2.6E-15 score: 55.9 coord: 215..278 e-value: 2.6E-6 score: 27.0 coord: 528..596 e-value: 7.1E-16 score: 57.7
IPR000504 RNA recognition motif domain PROSITE PS50102 RRM coord: 213..289 score: 9.166
IPR000504 RNA recognition motif domain PROSITE PS50102 RRM coord: 526..611 score: 16.466
IPR000504 RNA recognition motif domain PROSITE PS50102 RRM coord: 37..114 score: 15.63
IPR000504 RNA recognition motif domain PROSITE PS50102 RRM coord: 302..382 score: 15.716
IPR000504 RNA recognition motif domain SUPERFAMILY 54928 RNA-binding domain, RBD coord: 523..617
IPR000504 RNA recognition motif domain SUPERFAMILY 54928 RNA-binding domain, RBD coord: 213..385
IPR000504 RNA recognition motif domain SUPERFAMILY 54928 RNA-binding domain, RBD coord: 30..122
Blast
BLAST of TCONS_00062181-protein vs. Swiss-Prot (Human)
Match:
RBM28 (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3)
HSP 1 Score: 167.162 bits (422), Expect = 1.517e-43
Identity = 128/333 (38.44%), Postives = 194/333 (58.26%), Query Frame = 0
Query: 303 RLIVRNLSFKVELDELKECFSKFGKVLDVNIPTKTVNNKEVKIGCGFVQFENPSQGLAALEAMNMKEINGRAVIVDWAVKKDAYEKDKDSKAINDEP-----KQEKTDKKGKKVKEEEMSEDEDADDVEEEEEKDEEDAEDLSDEEADDDELSVDEEVEEEEASENEDSGVEKDEPMSEDEEGSDIDEEDELEEMSEDEGEE--ESDEDDEEDEAKQARIKEKMR-----DAKEGKTVFIRNMSYNTDDEGLMEEFEKFGEIDYCKIVMDRETGHSKGCAFLKFKEKDAADECIKEMEKLQDQQKNLVVDGRSIVVSKAVTKGKMGELERQKA 623
RLI+RNLSFK D+LK F++FG VL+VNIP K G GFVQF+N + AL+ MNMKEI GR V VDWAV KD Y+ + AI +E QE KKG++ ++ E E++D DD ++EE+ +D + EE ++ E V + V+ ++ + + + + EE SD++E D + D+GEE +SD EE E K ++ K + D EGKTVFIRN+S+++++E L E ++FGE+ Y +IV+ +T HSKGCAF +F ++AA +C+ +++ L +DGR + V AVT+ + +L+ K
Sbjct: 115 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMR---GFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEENDDDDDDDDEEDGVFDDED----EEEENIESKVTKPVQIQKRAVKRPAPAKSSD---HSEEDSDLEESDSI-----DDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASP-ENEAGGLKLDGRQLKVDLAVTRDEAAKLQTTKV 431
The following BLAST results are available for this feature: