Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00063680-protein ID=TCONS_00063680-protein|Name=TCONS_00063680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp RTACARIKKPITCKIRVYESIEKTVEYAKRLERAGAKIITVHGRRREQRG PLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAE GALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCLD NFPEMRHPLGKVKKFEDMCKISDTIKEKAKAIADKEIEEGKDSEEIGQLP FWRCQPYVRPPPKTTSGEKRPLEEGDEEAEAKAKLKPPSKRKAIREKHHQ HGKGAFPKVPKDKWPLCVTCKNNPWGKKCEHNLCKACCKDMTAIKVLDCS GHKFKFLFNKLRREKEDEEEAEKQKQNPENAPCQDKYIKAGVNVDENRKG GAKKKTVIMMPKI Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0055114 oxidation-reduction process
GO:0008033 tRNA processing
Vocabulary: Molecular Function
Term Definition
GO:0050660 flavin adenine dinucleotide binding
GO:0017150 tRNA dihydrouridine synthase activity
GO:0003824 catalytic activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0055114
oxidation-reduction process
biological_process
GO:0008033
tRNA processing
molecular_function
GO:0003824
catalytic activity
molecular_function
GO:0050660
flavin adenine dinucleotide binding
molecular_function
GO:0017150
tRNA dihydrouridine synthase activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
50 100 150 200 250 300 350 Score = Score = Expect = 1.72481E-42 / Score = 148.026 Score = Expect = 4.7E-32 / Score = 111.2 Expect = 2.7E-27 / Score = 95.2 Sequence Coil mobidb-lite cd02801 SSF51395 PF01207 G3DSA:3.20.20.70
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 304..324
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 208..256
None No IPR available CDD cd02801 DUS_like_FMN coord: 1..111 e-value: 1.72481E-42 score: 148.026
None No IPR available SUPERFAMILY 51395 FMN-linked oxidoreductases coord: 4..176
IPR001269 tRNA-dihydrouridine synthase PFAM PF01207 Dus coord: 6..186 e-value: 4.7E-32 score: 111.2
IPR013785 Aldolase-type TIM barrel GENE3D 3.20.20.70 coord: 2..113 e-value: 2.7E-27 score: 95.2
Blast
BLAST of TCONS_00063680-protein vs. Swiss-Prot (Human)
Match:
DUS1L (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)
HSP 1 Score: 264.233 bits (674), Expect = 1.382e-84
Identity = 146/334 (43.71%), Postives = 204/334 (61.08%), Query Frame = 0
Query: 6 RIKKPITCKIRVYESIEKTVEYAKRLERAGAKIITVHGRRREQRGPLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAEGALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCLDNFPEMRHPLGKVKKFEDMCKISDTIKEKAKAIADKEIEEGKDSEEIGQLPF-WRCQPYVRPPPKTTSGE------KRPLEEGDEEAEAKAKLKPPSKRKAIREKHHQHGKGAFPKVPKDKWPLCVTCKNNPWGKKCEHNLCKACCKDMTAIKVLDCSGHKFKFLFNKLRREKEDE-EEAEKQKQNPENA 331
++ P+TCKIRV+ I+KTV YA+ LE+AG +++TVHGR +EQ+GPL+G ASW+HIKAV++AV++PVFANGNIQ L+DVE+C+ T V VMSAEG L+NPA+F GR P WE+ ++YL ++P LSYVR HLF++W L E+R L KVK E + +S +K + + +EI + ++ G LPF W CQPY+RP P+ S E KR LEE + E +K K ++K +R H F K K+ C C NP G +C +LC+ CCK + + DC GH F K + EK +EA+ + Q P+ A
Sbjct: 139 KLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEGIAAVSQELKLRCQ----EEISRQEGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEEEEGGTEVLSKNK---QKKQLRNPHK-----TFDPSLKPKYAKCDQC-GNPKGNRCVFSLCRGCCKKRASKETADCPGHGLLF---KTKLEKSLAWKEAQPELQEPQPA 456
The following BLAST results are available for this feature:
BLAST of TCONS_00063680-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
R T A C A R I K K P I T C K I R V Y E S I E K T V E Y A K R L E R A G A K I I T V H G R R R E Q R G P L T G I A S W D H I K A V K E A V S V P V F A N G N I Q Y L R D V E K C I E Y T K V D A V M S A E G A L Y N P A I F T G R Q P P A W E M V D K Y L A Y C N Q Y P T N L S Y V R G H L F R M W Q K C L D N F P E M R H P L G K V K K F E D M C K I S D T I K E K A K A I A D K E I E E G K D S E E I G Q L P F W R C Q P Y V R P P P K T T S G E K R P L E E G D E E A E A K A K L K P P S K R K A I R E K H H Q H G K G A F P K V P K D K W P L C V T C K N N P W G K K C E H N L C K A C C K D M T A I K V L D C S G H K F K F L F N K L R R E K E D E E E A E K Q K Q N P E N A P C Q D K Y I K A G V N V D E N R K G G A K K K T V I M M P K I 50 100 150 200 250 300 350 Expect = 1.38e-84 / Id = 43.71 Sequence DUS1L
Match Name E-value Identity Description
DUS1L 1.382e-84 43.71 tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-li... [more]
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