TCONS_00063680-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063680-protein
Unique NameTCONS_00063680-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063680-protein ID=TCONS_00063680-protein|Name=TCONS_00063680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
RTACARIKKPITCKIRVYESIEKTVEYAKRLERAGAKIITVHGRRREQRG
PLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAE
GALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCLD
NFPEMRHPLGKVKKFEDMCKISDTIKEKAKAIADKEIEEGKDSEEIGQLP
FWRCQPYVRPPPKTTSGEKRPLEEGDEEAEAKAKLKPPSKRKAIREKHHQ
HGKGAFPKVPKDKWPLCVTCKNNPWGKKCEHNLCKACCKDMTAIKVLDCS
GHKFKFLFNKLRREKEDEEEAEKQKQNPENAPCQDKYIKAGVNVDENRKG
GAKKKTVIMMPKI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039921XLOC_039921Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063680TCONS_00063680Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001269tRNA_hU_synthase
IPR013785Aldolase_TIM
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008033 tRNA processing
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
50100150200250300350Score = Score = Expect = 4.7E-32 / Score = 111.2Expect = 2.7E-27 / Score = 95.2SequenceCoilmobidb-litecd02801SSF51395PF01207G3DSA:3.20.20.70
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 304..324
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..256
NoneNo IPR availableCDDcd02801DUS_like_FMNcoord: 1..111
e-value: 1.72481E-42
score: 148.026
NoneNo IPR availableSUPERFAMILY51395FMN-linked oxidoreductasescoord: 4..176
IPR001269tRNA-dihydrouridine synthasePFAMPF01207Duscoord: 6..186
e-value: 4.7E-32
score: 111.2
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 2..113
e-value: 2.7E-27
score: 95.2

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063680-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
RTACARIKKPITCKIRVYESIEKTVEYAKRLERAGAKIITVHGRRREQRGPLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAEGALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCLDNFPEMRHPLGKVKKFEDMCKISDTIKEKAKAIADKEIEEGKDSEEIGQLPFWRCQPYVRPPPKTTSGEKRPLEEGDEEAEAKAKLKPPSKRKAIREKHHQHGKGAFPKVPKDKWPLCVTCKNNPWGKKCEHNLCKACCKDMTAIKVLDCSGHKFKFLFNKLRREKEDEEEAEKQKQNPENAPCQDKYIKAGVNVDENRKGGAKKKTVIMMPKI50100150200250300350Expect = 1.38e-84 / Id = 43.71SequenceDUS1L
Match NameE-valueIdentityDescription
DUS1L1.382e-8443.71tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-li... [more]
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