TCONS_00063680-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063680-protein
Unique NameTCONS_00063680-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063680-protein ID=TCONS_00063680-protein|Name=TCONS_00063680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
RTACARIKKPITCKIRVYESIEKTVEYAKRLERAGAKIITVHGRRREQRG
PLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAE
GALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCLD
NFPEMRHPLGKVKKFEDMCKISDTIKEKAKAIADKEIEEGKDSEEIGQLP
FWRCQPYVRPPPKTTSGEKRPLEEGDEEAEAKAKLKPPSKRKAIREKHHQ
HGKGAFPKVPKDKWPLCVTCKNNPWGKKCEHNLCKACCKDMTAIKVLDCS
GHKFKFLFNKLRREKEDEEEAEKQKQNPENAPCQDKYIKAGVNVDENRKG
GAKKKTVIMMPKI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039921XLOC_039921Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063680TCONS_00063680Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001269tRNA_hU_synthase
IPR013785Aldolase_TIM
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008033 tRNA processing
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 304..324
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 208..256
NoneNo IPR availableCDDcd02801DUS_like_FMNcoord: 1..111
e-value: 1.72481E-42
score: 148.026
NoneNo IPR availableSUPERFAMILY51395FMN-linked oxidoreductasescoord: 4..176
IPR001269tRNA-dihydrouridine synthasePFAMPF01207Duscoord: 6..186
e-value: 4.7E-32
score: 111.2
IPR013785Aldolase-type TIM barrelGENE3D3.20.20.70coord: 2..113
e-value: 2.7E-27
score: 95.2

Blast
[Close]
BLAST of TCONS_00063680-protein vs. Swiss-Prot (Human)
Match: DUS1L (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 1.382e-84
Identity = 146/334 (43.71%), Postives = 204/334 (61.08%), Query Frame = 0 
Query:    6 RIKKPITCKIRVYESIEKTVEYAKRLERAGAKIITVHGRRREQRGPLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAEGALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCLDNFPEMRHPLGKVKKFEDMCKISDTIKEKAKAIADKEIEEGKDSEEIGQLPF-WRCQPYVRPPPKTTSGE------KRPLEEGDEEAEAKAKLKPPSKRKAIREKHHQHGKGAFPKVPKDKWPLCVTCKNNPWGKKCEHNLCKACCKDMTAIKVLDCSGHKFKFLFNKLRREKEDE-EEAEKQKQNPENA 331
            ++  P+TCKIRV+  I+KTV YA+ LE+AG +++TVHGR +EQ+GPL+G ASW+HIKAV++AV++PVFANGNIQ L+DVE+C+  T V  VMSAEG L+NPA+F GR P  WE+ ++YL    ++P  LSYVR HLF++W   L    E+R  L KVK  E +  +S  +K + +    +EI   + ++  G LPF W CQPY+RP P+  S E      KR LEE +   E  +K K   ++K +R  H       F    K K+  C  C  NP G +C  +LC+ CCK   + +  DC GH   F   K + EK    +EA+ + Q P+ A
Sbjct:  139 KLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEGIAAVSQELKLRCQ----EEISRQEGAKPTGDLPFHWICQPYIRPGPREGSKEKAGARSKRALEEEEGGTEVLSKNK---QKKQLRNPHK-----TFDPSLKPKYAKCDQC-GNPKGNRCVFSLCRGCCKKRASKETADCPGHGLLF---KTKLEKSLAWKEAQPELQEPQPA 456
The following BLAST results are available for this feature:
BLAST of TCONS_00063680-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS1L1.382e-8443.71tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-li... [more]
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