TCONS_00064140-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064140-protein
Unique NameTCONS_00064140-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064140-protein ID=TCONS_00064140-protein|Name=TCONS_00064140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MAEVRPTRKVALITGITGQDGSYLAELLLNKGYEVHGIIRRSSSFNTGRI
QNLYENKTAHVTGDLHLHYGDMTDSSCLLKVVSKSQPCEIYNLAAQSHVK
VSFDLAEYTADTDAMGTLRLLEAIKTCNLIGKVKFYQASTSEMYGKVREI
PQTELTPFHPRSPYGVAKLYAYWIVVNYREAYGLFGCNGILFNHESPRRG
ETFVTRKITRGVAKISLGLQDELVLGNLDSIRDWGHAKDYVEAMWLMLQQ
EGADDYVVATNETHSVREFVEKSFGHVGVKIRWEGESENEVGYDDATNTP
RVRVSSKFYRPAEVDYLQGDPAKAEAKLGWKRKVPFEELVKEMVESDIEL
MKANPSA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040214XLOC_040214Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064140TCONS_00064140Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
IPR006368GDP_Man_deHydtase
Vocabulary: Molecular Function
TermDefinition
GO:0008446GDP-mannose 4,6-dehydratase activity
Vocabulary: Biological Process
TermDefinition
GO:0019673GDP-mannose metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019673 GDP-mannose metabolic process
molecular_function GO:0008446 GDP-mannose 4,6-dehydratase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.25.10coord: 213..257
e-value: 6.0E-24
score: 84.3
coord: 258..356
e-value: 2.8E-31
score: 108.1
NoneNo IPR availableGENE3D3.40.50.720coord: 2..212
e-value: 1.1E-22
score: 80.0
NoneNo IPR availableCDDcd05260GDP_MD_SDR_ecoord: 10..349
e-value: 0.0
score: 556.826
IPR016040NAD(P)-binding domainPFAMPF16363GDP_Man_Dehydcoord: 12..343
e-value: 3.9E-157
score: 522.7
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 9..349
IPR006368GDP-mannose 4,6-dehydrataseTIGRFAMTIGR01472TIGR01472coord: 9..350
e-value: 9.6E-179
score: 591.8
IPR006368GDP-mannose 4,6-dehydrataseHAMAPMF_00955GDP_Man_dehydratasecoord: 9..353
score: 56.266

Blast
[Close]
BLAST of TCONS_00064140-protein vs. Swiss-Prot (Human)
Match: GMDS (GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMDS PE=1 SV=1)

HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 248/356 (69.66%), Postives = 292/356 (82.02%), Query Frame = 0 
Query:    2 AEVRPTRKVALITGITGQDGSYLAELLLNKGYEVHGIIRRSSSFNTGRIQNLYENKTAHVTGDLHLHYGDMTDSSCLLKVVSKSQPCEIYNLAAQSHVKVSFDLAEYTADTDAMGTLRLLEAIKTCNLIGKVKFYQASTSEMYGKVREIPQTELTPFHPRSPYGVAKLYAYWIVVNYREAYGLFGCNGILFNHESPRRGETFVTRKITRGVAKISLGLQDELVLGNLDSIRDWGHAKDYVEAMWLMLQQEGADDYVVATNETHSVREFVEKSFGHVGVKIRWEGESENEVGYDDATNTPRVRVSSKFYRPAEVDYLQGDPAKAEAKLGWKRKVPFEELVKEMVESDIELMKANPSA 357
             E+   R VALITGITGQDGSYLAE LL KGYEVHGI+RRSSSFNTGRI++LY+N  AH+ G++ LHYGD+TDS+CL+K++++ +P EIYNL AQSHVK+SFDLAEYTAD D +GTLRLL+A+KTC LI  VKFYQASTSE+YGKV+EIPQ E TPF+PRSPYG AKLYAYWIVVN+REAY LF  NGILFNHESPRRG  FVTRKI+R VAKI LG  +   LGNLD+ RDWGHAKDYVEAMWLMLQ +  +D+V+AT E HSVREFVEKSF H+G  I WEG++ENEVG    T    V V  K+YRP EVD+LQGD  KA+ KL WK +V F+ELV+EMV +D+ELM+ NP+A
Sbjct:   17 GEMGKPRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRTNPNA 372
The following BLAST results are available for this feature:
BLAST of TCONS_00064140-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GMDS0.000e+069.66GDP-mannose 4,6 dehydratase OS=Homo sapiens GN=GMD... [more]
back to top