TCONS_00067699-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00067699-protein
Unique NameTCONS_00067699-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00067699-protein ID=TCONS_00067699-protein|Name=TCONS_00067699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MMRSMLVRCQYCQINRVNAFLSSKRCIVASTQQYAKTVAIHSNITVHDLA
SKLKKKSKTILELLDEYGYVVDHGINTALDIDIAGAIADEFGYKVTNEKE
KKEEKYHEDAGVSFPRPPVITIMGHVDHGKTTLLDYLRKTQVAENEAGGI
TQAISAFSVKVPGLSDSITFVDTPGHAAFNNMRARGAQTTDAVVLIIAAD
DGIMEQTVECIKHIKKADVPLIVAFNKMDKPKANTDKIKKDLLTHGLQLK
EQGGDIDCVEISALKGNNVDELLVLLNGLSKKHTFKASYDGPAQIVVLET
ENSKQKGMTSMVLVKHGQLSKGKVLMTDDGFIKVNIHL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_042264XLOC_042264Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00067699TCONS_00067699Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR006847IF2_N
IPR000795TF_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 113..298
e-value: 4.1E-43
score: 147.0
NoneNo IPR availablePFAMPF00009GTP_EFTUcoord: 120..276
e-value: 1.9E-32
score: 112.3
NoneNo IPR availableGENE3D2.40.30.10coord: 299..335
e-value: 2.2E-4
score: 21.2
NoneNo IPR availableGENE3D3.30.56.50coord: 44..87
e-value: 3.0E-6
score: 26.6
NoneNo IPR availableCDDcd01887IF2_eIF5Bcoord: 118..280
e-value: 5.34411E-87
score: 260.867
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 118..273
e-value: 7.1E-32
score: 108.4
IPR006847Translation initiation factor IF-2, N-terminalPFAMPF04760IF2_Ncoord: 42..94
e-value: 3.3E-10
score: 39.5
IPR000795Transcription factor, GTP-binding domainPROSITEPS51722G_TR_2coord: 115..284
score: 42.972
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 109..276

Blast
[Close]
BLAST of TCONS_00067699-protein vs. Swiss-Prot (Human)
Match: IF2M (Translation initiation factor IF-2, mitochondrial OS=Homo sapiens GN=MTIF2 PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 5.099e-71
Identity = 134/327 (40.98%), Postives = 194/327 (59.33%), Query Frame = 0 
Query:   30 STQQYAKTVAIHSNITVHDLASKLKKKSKTILELLDEYGYVVDHGINTALDIDIAGA-----------IADEFGYKVTNEKEKKEE---------KYHEDAGVSFPRPPVITIMGHVDHGKTTLLDYLRKTQVAENEAGGITQAISAFSVKVPGLSDSITFVDTPGHAAFNNMRARGAQTTDAVVLIIAADDGIMEQTVECIKHIKKADVPLIVAFNKMDKPKANTDKIKKDLLTHGLQLKEQGGDIDCVEISALKGNNVDELLVLLNGLSKKHTFKASYDGPAQIVVLETENSKQKGMTSMVLVKHGQLSKGKVLMTDDGFIKVNI 336
            S+ +  K V +   +T+ +LA  ++K +  + E L          +NT +DID   A           +  + G K+   K K+++         +   D  +  PR PV+TIMGHVDHGKTTLLD  RKTQVA  E GGITQ I AF V +P   + ITF+DTPGHAAF+ MRARGAQ TD VVL++AADDG+M+QTVE I+H K A VP+I+A NK DK +A+ +K+KK+LL + +  ++ GGD+  V +SAL G+N+  L      L++    KA  +GP +  V+E+   K +G+ +  +++ G L KG VL+    + KV +
Sbjct:   83 SSTKSKKVVEVWIGMTIEELARAMEKNTDYVYEAL----------LNTDIDIDSLEADSHLDEVWIKEVITKAGMKLKWSKLKQDKVRKNKDAVRRPQADPALLTPRSPVVTIMGHVDHGKTTLLDKFRKTQVAAVETGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAQVPIILAVNKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVPVSALTGDNLMALAEATVALAEMLELKADPNGPVEGTVIESFTDKGRGLVTTAIIQRGTLRKGSVLVAGKCWAKVRL 398
The following BLAST results are available for this feature:
BLAST of TCONS_00067699-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF2M5.099e-7140.98Translation initiation factor IF-2, mitochondrial ... [more]
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