TCONS_00069949-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00069949-protein
Unique Name	TCONS_00069949-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	732

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00069949-protein ID=TCONS_00069949-protein|Name=TCONS_00069949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=732bp
MASRQECMNDLIKTARGNKFSSLRKLASNEQEVYNIWDTISQLVEKSMEQ
RKAVHIPGLGVFTFTSSKLDVGHNKYILIQRPVFILSEKLAKTHRLTQSK
YHVPGEIPVIQLNFAALAIEINVSRDLVEASVKEVVNALSRAIDKMGACE
ISFSTIGNLVISNGAAKMKFLPVFLEKMDNTGHLSKFLTQRPETSSSILS
DNSLLLPKIQPGDGLKTSKEMPVIREEDDSNGGQDNSDRASPIRKENTDS
LISSPKKTKEIITPTMKVEPRSPRIQQLTISEEHSKPNTPNTNKRSPFNN
LKRTVAFKEQPVRNEIESKQSTRVFPTPRPSQLQILNQLKKNAAKSKDLP
EETRCANCVENMNDFCYLCYQRERRNVPIYYTEERKKEEEEDDHLLQMYT
LLKDKEAFKREEESNNKKRDEAQDIARFNMSASETQKKKYEPSNEFQRSF
VFRSRPITPPHYIKQEDYQTDLARQVSDKRCSTNKSMKDKDRLERLEQLE
LAEDLAIQREHYWKSKRLQSDQYRKALDTQVYIKKCLDERYEESLGPNRR
TFSLPRPNVLLPFKGGRVQMSFKTSELPASYPDSEGPVFGVYDLDFDKLK
ERRKGAQNLYQNQMTMASEKRNQEMMRNVRLRREEENMLKRTKLDLLQET
LMRNQANLKQRQDLEKTWARQAIKKRGREIDDKLRDYSAGMLLQEQCDKY
KRCGQCTRHTGNYGQSNVWSETRYVSGSRLMV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043541	XLOC_043541	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00069949	TCONS_00069949	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010992	IHF-like_DNA-bd_dom
IPR028034	DUF4496

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010992	Integration host factor (IHF)-like DNA-binding domain	GENE3D	4.10.520.10		coord: 18..104 e-value: 0.003 score: 17.5
IPR028034	Domain of unknown function DUF4496	PFAM	PF14908	DUF4496	coord: 35..170 e-value: 4.5E-38 score: 130.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..298
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 409..440
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..256

Blast

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BLAST of TCONS_00069949-protein vs. Swiss-Prot (Human)
Match: CCD81 (Coiled-coil domain-containing protein 81 OS=Homo sapiens GN=CCDC81 PE=2 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 1.452e-94
Identity = 222/721 (30.79%), Postives = 361/721 (50.07%), Query Frame = 0

Query:   29 NEQEVYNIWDTISQLVEKSMEQRKAVHIPGLGVFTFTSSKLDVGHNKYILIQRPVFILSEKLAKTHRLTQSKYHVPGEIPVIQLNFAALAIEINVSRDLVEASVKEVVNALSRAIDKMGACEISFSTIGNLVISNGAAKMKFLPVFLEKMDNTGHLSKFLTQRPETSSSILS---------DNSLLLPKIQPGDGLKTSKEMPVIREEDDSN-----GGQDNSDRASPIRKENTDSLISSPKKTKEIITPTMKVEPRSPRIQQLTISEEHSKPNTPNTNKRSPFNNLKRTVAFKEQPVRNEIESKQSTRVFPTPRPSQLQILNQLKKNA-AKSKDLPEETRCANCVENMNDFCYLCYQRERRNVPIYYTEERKKEEEEDDHLLQMYTLLKDKEAFKREEESNNKKRDEAQDIARFNMSASETQKKKYEPSNEFQRSFVFRSRPITPP-HYIKQEDYQTDLARQVSDKRCSTNKSMKDKDRLERLEQLELAEDLAIQREHYWKSKRLQSDQYRKALDTQVYIKKCLDERYEESLGPNRRTFSLPRPNVLLPFKGGRVQMSFKTSELPASYPDSEGPVFGVYDLDFDKLKERRKGAQNLYQNQMTMASEKRNQEMMRNVRLRREEENMLKRTKLDLLQETLMRNQANLKQRQDLEKTWARQAIKKRGREIDDK-LRDYSAGMLLQEQCDKYKRCGQCTRHTGNYGQSNVWSETRYVSGSRLMV 732
            +++EV  IW  +S+ V + +   K V IP  G FTF   KL+VG+NK+ILIQRPVFI+ EKL + H L Q+K + PGEIP++ LNF  +++E   +RD+VE  VKE +  LSR+I      E +F  IG L+I +   KM+F   FL  MD +G L+K L  RP T  S+LS          + L  P+I+  + ++    M  + EE   N       +D SD+    R       ISSPK+ +                                 ++++ F      V+  E+  R+E   K  T       P  L   + LK ++  K +  P    C +  +   + CY+C QR +RN  +YY+EE ++ E ED+ L+Q Y +LKD+EA  R +  +   R++ Q  A +N+  +E  +       EF +SF+F  RP++P  + +KQE+Y   L +Q+ +++ +  K  + ++ ++RLEQ++L E+LA QR  + K K  ++  Y++ALD Q+                                         K S LP   PDS  P+FG  + +   + E++K  QN  ++Q+  A+  + + ++  +  +R +  ML+RT+ + L +     +   +  Q L++ W R A  K+ R+++DK     S  + L +QC+KY+RC QC R T N G+SN+W   +++ GSRL+V
Sbjct:   24 SQEEVSIIWGNVSEFVRRQLTLHKGVQIPAFGTFTFIRQKLEVGNNKFILIQRPVFIMVEKLVQIHGLKQNKVYTPGEIPIVPLNFVMISLEGPFNRDVVEGCVKETLLFLSRSISMKQNVEFTFKGIGVLMIRDSKVKMRFYKDFLCTMDGSGALAKALANRPGTVDSVLSSREALRKWPSSVLAFPRIELKE-MENKLPMETLVEECGENRERKCKLKDQSDKEEGTRD------ISSPKRLR---------------------------------DRQALFPAKVTNVSLLEKFERSESGGKIMT-------PESLSYPSCLKHDSEMKPQTSPA---CQDHNKAGQEMCYVCLQRAQRNSLLYYSEE-RRREIEDERLIQQYQMLKDQEALFRHQMKSLATREQNQKNAAYNLGVAEAIRNHKNEKPEFYKSFLFDKRPLSPALNALKQEEYSRSLLKQMDNRQENEIKQRQYRELMDRLEQVQLTEELAAQRAKFLKDKMEETQCYKRALDAQI---------------------------------------KNKPSRLPPFEPDSSEPIFGKNEGEL--MVEKQKREQNYMKHQLEAAANHKRKAILHQLVDQRRDLQMLQRTQREHLADRTAELERVNRVNQCLQEDWERSAAMKKQRDLEDKAFERASDKLFLLDQCEKYRRCKQCQRRTSNVGESNLWPLNKFLPGSRLLV 652

The following BLAST results are available for this feature:

BLAST of TCONS_00069949-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00069949-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CCD81	1.452e-94	30.79	Coiled-coil domain-containing protein 81 OS=Homo s...	[more]

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TCONS_00069949-protein (polypeptide) - C. hemisphaerica